Scaffold Ga0214919_10003921

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10003921
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22074
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (81.58%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008237	Metagenome	336	Y
F012770	Metagenome / Metatranscriptome	277	Y
F023052	Metagenome / Metatranscriptome	211	Y
F046323	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000392111	F046323	GGTGG	MTQHYEVVYETKGVKVVNVWLSPEQELPEQWNTMTYAEQDEWLYEHQVHSNIKWQDEHKGEAVNVLPVAQLKAVAN
Ga0214919_1000392117	F008237	N/A	MSIGWERIEPWKYIVDAVASEYSRKFQDIEPQDLRQILYQWFLEHPNKLDTWEAIGQKDAKNLIYRSLRNQALDYCQHWKAKSGGYETSDLFFYESDMVEALLPPVLRGEFGVTHKLNLGGPARPSAPSEGGNLMAMMIEVDLGFWKLHQDDRKLLFLRYVESMDFGDIATQLSLASEDTARMRHKRAIKKLINKIGGFKPFRDEDDVPIAAEN
Ga0214919_1000392120	F012770	AGG	VTFDDEPPHNYCNDCNETFENSFQLIDHTLEEDDEFDPYYLLPNGYKLLLGSLLRFMYNNADEPEQIKLITQSTYVTLFASENGYDLVDELVEDMIVRSALQHFDEDLEALLKKDIADEEDGE
Ga0214919_1000392131	F023052	GGA	MGIAWVVLDGSAKTVVGYAIVGTLVVWAVTYPLRNPKDE