Scaffold Ga0214919_10003611

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10003611
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23235
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (86.05%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001094	Metagenome / Metatranscriptome	780	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003784	Metagenome	468	Y
F003863	Metagenome	464	Y
F044438	Metagenome	154	Y
F083706	Metagenome / Metatranscriptome	112	Y
F095135	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000361110	F001094	AGAAGG	MNAKTQAVLATYLRAGIAAIIALYLAGESDPKKLAMAAVAAVAGPVLKWLDPKATEFGRGSK
Ga0214919_1000361118	F044438	AGGA	MQWQDTKEHTMSKSNTEMAYVKNRINKLEKDFAAFASLLIQAGIVRVDVEEGQQVFAVNKVKLDGE
Ga0214919_1000361122	F003784	GGA	MYDNDRERVGHNATDFAAYGLSHLAAGQNNTTDTHTPATNPLADHPAVAGYRKVGVSTENLTSFIESFASLRAMRVKGVGHEQYAIAQGQKFESFTTSDTVRELIEELADASNYIDFLAIKLLNIQYTIDQVLPDCE
Ga0214919_1000361129	F003863	GGAGG	MESKQVSGRQVVHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWSINPDSRLTVGIHTRANSTPPFGDPADAGEDEGNYGGEA
Ga0214919_1000361130	F001477	GAGG	MSNIYTIHPKKSDLILLYEVVDENGNAEWGGNDPEQCLQWLYLAPTGSRVLVSGWESDEEDAHLVGQSLDITDIIKAASL
Ga0214919_1000361131	F000821	GGAGG	MNEEYLRAKFNLCLDQAEKNIKEEDIALAIKNLERANSAMARLFGLEEGEDE
Ga0214919_1000361134	F083706	AGGAG	MQYITPRGWLVAGILIGLAIWGLWEIASHLLWTGTGYEWCEDLLTCEGEGK
Ga0214919_1000361141	F095135	N/A	MATKKPTPKATVKAPVKKKVQVMPDKISPSKMTPAQKARYLKNPERYDY