Scaffold Ga0214919_10003602

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10003602
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23255
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (87.80%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073074	Metagenome	120	N
F096875	Metagenome	104	N
F104461	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000360222	F096875	GGA	MPTSGRWKVTVFLGAEAKLNASYTHEALPEWIRKDIALLSMVHHMDDIPSIGHRLGDVYWLTPKDKDESCTGV
Ga0214919_1000360227	F073074	GGA	MDIILKTAKDASRLLNAIRAQYIIVLPTGEQIIEGDLKLHVPDATPPKKKRAQSRNPLGYLRGHLMPYLKPMKVGDVAVIPIPNNSDVKEIQGSAASMSNVLWGKGNYKTMRNNDTGNVEVLRMG
Ga0214919_1000360241	F104461	GGA	MNPNLLDLDPALMQSFEAQVKANTITRTADDIKALQNKRKASGKPTLRQTRDQRAFDVRVKSLKPNEDMLKRLRSLAVGNYFVVPATEAVAIRNMTARELRDRGIKYTTTKFVFGRHEYVKVHRHNPIHDKE