Scaffold Ga0214919_10001891

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10001891
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33604
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (91.80%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F015570	Metagenome	253	Y
F019101	Metagenome	231	N
F024504	Metagenome	205	N
F029673	Metagenome	187	N
F032957	Metagenome	178	Y
F079808	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000189128	F004231	AGGAG	MSVKPKDFQHEICVYLEGIGECLVCFDILTPGEELDPDHNDDYEIDFAVFDEQDKHITYDINKKQYNHCENKAMEEMLEITTQWHKEWESV
Ga0214919_1000189130	F029673	GGA	MTKAEMIQHLRMAACSENTITGMANAFDLGAEHERDVVCSLLFNMIKDIRLAQNIVDTIRVRE
Ga0214919_1000189131	F015570	AGG	MNDKLDQAFDLLEFDVTDQIRNSTYLAEQRKISTGVTDGSIQRALVRDLTENLRSLPVSSDPLLLRNDVLEEVAVELAKLPFGDTAASYAAFVRAMKS
Ga0214919_1000189132	F024504	AGGAG	MDRPTVGITAPYRKSDYTYQNMLLDRIKDLETLVAKLEQRIKVLEAK
Ga0214919_1000189134	F079808	GAGG	MKIQDELQAIYEDQADVYYCCYCLQPQGEKIGCCHENHFVEFKYLDNDCRQEIAQEILNG
Ga0214919_1000189135	F032957	AGGAG	MDDFNPTTRMFPRSLREAYPKDYVNENIIEGPFYSAPNIHDIPVLFALIAVLSMIAVAIWRYF
Ga0214919_1000189148	F019101	AGG	MLHEGRMELEGAKKTIEGVMADVKAIKGIWDWIVGLFNPKPKSKSEDAPKPLAKAKAASKKQQTYEEIELQTINEVGVQLGNFFDIQAQLNDYYASLEAESKEHYDPNQNTSKKAIERALVELQMENLDAQIREQMTVYAPPELKAIYTRFLKMYAKIQQEQEWARDEEIRKTRRARWAKEQREIDFIYFVSGLVGVAFISLVMGWIMWQVKTMTQSSLLLG