Scaffold Ga0214919_10001523

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10001523
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37703
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (72.50%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001106	Metagenome / Metatranscriptome	776	Y
F002501	Metagenome / Metatranscriptome	553	Y
F003408	Metagenome / Metatranscriptome	488	Y
F005053	Metagenome / Metatranscriptome	413	Y
F009961	Metagenome / Metatranscriptome	310	Y
F014144	Metagenome / Metatranscriptome	265	Y
F031101	Metagenome	183	Y
F070122	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000152310	F014144	GAGG	MTDSRVVICPECKKEIKVQLGIFAHATLSRHMKEHK
Ga0214919_1000152313	F002501	N/A	MTCTKCKGRVFIDRVFSQKLHMELFCIMCGKRWMFNKETNGFGKWLDELEQKNQKNYGIS
Ga0214919_100015232	F031101	AGGCGG	MNDLFWYKIKLREAVSTTAMENGWDNEKCKEVFDSLMNQYLVSRGFK
Ga0214919_1000152325	F005053	GAGG	MGYVTMPRGSILSIEAKDLLATPAGNTVKWNKITEHNRSQFDIATERIESKNRTSNGTLRKFWVADKKTFTVSWDMLPSYRTLTVDGGWGAEDIRSFFASPEGKLPFNIKINLAKNGTDQTESASDYEVYSVSFSQASFTIQKRGIQPHWNVQIILEEI
Ga0214919_1000152327	F003408	AGAAG	MPEMIQTFKAMQKSESEKRKFLASIQGIDMEEENEDQNTTTFEDVKRRALGITSSADDIVSLQGSFAGEAGFGIGAGLGYSKE
Ga0214919_1000152330	F009961	GGAGG	MTDYKVDAIFEIRRYLWEELIKNDVFTASDYYSDNINMEIIPIIPVQQQPELNQFLSGKKHIVYDKVGISYEDIWLICCEKILFTIYATDVSEINEIRNLMTDIFRRMDDSARDVNSQKISQIFKFYSTSVVEISSTTPSAELQGFLSADVIVEVKYSRMVGSDGRFI
Ga0214919_1000152332	F070122	N/A	MELVSSLMPLKLDIYLQSDTQDENTGAIKKQWSYYKTMPCSAKGVISNSATSRSGDKQAIGTKYTNEQVLEIRSIDQITYREKITNIRDIKGNVIWKELNFPSDTPTVFEIISSTPVTDPFGNVMAYNSVAKRSENQKIDI
Ga0214919_1000152334	F001106	AGGAG	MSFETLKVAELKEIAESFAVDTNGLKNKKDLIAAMAEEGVTYSIYENTTKAVEAATEEIEVLPKFDPKSQAEGTVLVRMTRDNARYDIHGNTFTKAHPFIALTEEQAQEIFNTEEGFRLATPKEVQDFYS