Scaffold Ga0214919_10001432

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10001432
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39062
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 66 (92.96%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001817	Metagenome / Metatranscriptome	630	Y
F007517	Metagenome	349	Y
F022373	Metagenome	214	Y
F034068	Metagenome / Metatranscriptome	175	Y
F055720	Metagenome / Metatranscriptome	138	N
F056318	Metagenome	137	Y
F069823	Metagenome	123	Y
F090062	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000143219	F001817	AGGAG	MSMQTDVQSAHLSAAGSYYAGRTRLKGIVVTPKATTVATFEIRNGSASGAVLYTMDIPSLGTPNSFNIIVPGEGILATTGLYLTLSVGSITGITVFYG
Ga0214919_1000143226	F007517	AGG	MNPLLESLNKKLEEHIKQLVQIVSEGGAKSHDHYKELCGTIRGLQTAQYELADLVRKTKDNDDD
Ga0214919_1000143233	F069823	GGAGG	MYTAQIDRFGNIIVCKGDRERNGYRIFFTGTYNECLNRKVIAA
Ga0214919_1000143241	F055720	AGGAG	MNTTLILNTNASNCTFMLAVDLRYTTKAFPALSRIQRALDKFLTNNSHWLAEDEPQIVAVVQSDSKLNVKYASGLSLTKIDPLYV
Ga0214919_1000143246	F056318	GGAG	MFKHITPHPWTALSATVWGYEGTFGQPQVASCVNKNQPMATQRANARLISIAPQMYEIIQKLHGNEEAMRLVQYMEKEIDHAD
Ga0214919_1000143247	F034068	AGGAG	MQIKTIRKSERDIDYERLYKAYEGLIEWIGTNDVDGQETMGLLVKAAVALAVTNHLPRNEIMEVVAVTYEMERSMRPRSDEVH
Ga0214919_1000143266	F090062	GGA	MLTAEQLRRKARKIYNNDMVPEHINRHNQRKWVRSVLQLGDRWLIAKPIGSLNATQSNS
Ga0214919_1000143267	F022373	GGAG	MQPKVILEFSYPDDEDRLLFAVKGPEMYKALTNIKMAVTGEFTHKADMAIALARIRDLTDQVFTELGE