Scaffold Ga0214919_10001406

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10001406
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39518
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (91.80%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006696	Metagenome	366	Y
F008813	Metagenome	327	Y
F027821	Metagenome	193	Y
F078404	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000140617	F078404	GGAGG	MRQHYKPEPVARPWADLLLAVSIGLILAVILLEYL
Ga0214919_100014062	F008813	N/A	MSFFGIPIRNGVSIGLGSIVSLLSGYATATVQNNLLTELSDNLVQEDGGLILLE
Ga0214919_1000140624	F027821	AGGA	MAKDNNTGKDKEFYERGKRMFDRIQPLKPPIQADIDLLYTANSADIEALEDAKITLNVIKEVDPGVYDEIIDSCLALINKALGMSYGDAMERVAKRAGGKV
Ga0214919_1000140629	F006696	GAGG	MKFIKFLKDYYRDLTPAEVIQRELACAHLDRLEAEAAVEYAKAVLDMNMTRIERLNTRLGEYK
Ga0214919_1000140658	F008813	N/A	MSFFGIPIRNGVSIGLGSIVSLLSGYADATVQSNLLTESDDNLIQEDGGLILLE