Scaffold Ga0214919_10001214

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10001214
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42902
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (49.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046245	Metagenome / Metatranscriptome	151	Y
F048761	Metagenome	147	Y
F089783	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000121443	F089783	N/A	MTVNQANQVNAKASTGEVTVSGKNVKFSARTVKAESFAV
Ga0214919_1000121458	F046245	AGG	MLEYVITFFAVFATDLIYVYFVKSIQDNRPLMAAWWSMAVTFTASVAVINYTQDHWALIPALLGAYCGTLFGMWIKRKINLKS
Ga0214919_100012149	F048761	AGGA	MTDINNLTNVAIERAKHLQEFAVFRDMDTIVFSGKPAPYSIRHNMGELAEITVPAINQDEAEQRVNEWINGQQV