Scaffold Ga0214919_10001031

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10001031
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46982
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (64.10%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045555	Metagenome / Metatranscriptome	152	Y
F064667	Metagenome / Metatranscriptome	128	N
F102821	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000103120	F045555	AGGA	MTSIFIVRAEYCGAPESHIYGVYPTVELALARIAVLEGEDFGYEIAWYDEVTVGPDGADCCLANR
Ga0214919_100010316	F064667	AGGAG	MFIGLMGVDSDGKTMYTPSGEKIFFTLPWGLARQAQRIQHWIARKTWR
Ga0214919_100010318	F102821	N/A	MIVRLANKIGQLHGRFFIWLGHKAESNPWWAVALTVWALYEIGEHIAGPVMAVLYATGHMTFN