Scaffold Ga0214919_10000213

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10000213
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 100746
• Total Scaffold Genes: 168
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 115 (68.45%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012867	Metagenome	276	Y
F013086	Metagenome / Metatranscriptome	274	Y
F014736	Metagenome	260	Y
F021106	Metagenome	220	Y
F028513	Metagenome / Metatranscriptome	191	Y
F058149	Metagenome / Metatranscriptome	135	N
F072348	Metagenome	121	Y
F077308	Metagenome	117	N
F092063	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_10000213112	F072348	GGA	MKYYTFYRENNNFDDILSDNIVKKFAQTKIKWYQYFMIGMRKDGNDQNFSMLTLKYGEDMVNNLTKDFTPIPGVDYIPKKR
Ga0214919_10000213146	F092063	GAG	MSKMAELDLCIRDMLEEGYNPVSISVRLGVPVHFVYDILEYDQYGEDLSPYNTVNS
Ga0214919_10000213158	F012867	GAG	MMKDFMYEQQRESITEDWGDEISLAILSEKLNVPRVSYRIYYSNDNLTRRIFIFRGNCSQAETEIMLGLGFTFAKDGDTENIPDQLVEV
Ga0214919_10000213159	F014736	GGAG	MNTPIVPDNVIKMWADSRFQILAEVDKLLTGSKTWAGMEYTYHPIHPDKYKPVAVKVRKALYDLQAEYRVEE
Ga0214919_10000213161	F013086	GGAG	MSYSDLISDGGMDPRERELIGYTEREEGFYPLYAPPKGSIVTHAFILCKYCNVSISPCMGPRYDAVCLDCYEKDPDAR
Ga0214919_1000021351	F077308	N/A	MIHIKRFIDRVASIESRQGKDVVIPLSDARGLRDELAKLLVDHYESTEGKKNTSEVIQVELVGGKF
Ga0214919_1000021359	F028513	GGAG	MLNHLAGYFCSLLNNFSRPQTYGSALEEYIVRHAPQNACDVDRLTRQFEIQQSGRGW
Ga0214919_1000021361	F058149	AGGA	MFTPDFYIEMFQTSKRMATNQIFKDERLNKVANDFIDAQTVFAKMMAKNTIEMLTYAADSMSKTIYPQGEDETVKAKTEKK
Ga0214919_1000021371	F021106	N/A	MAGWNTIQQVRKLEERADSLGMRFTPYKHDDMYGENVALVPKDKDALPIYSRDAILFAGSLEHADRFMQGVLWAREYDRMAIDRNLDKKRERKEQDERNKQMVKILKEEKLSLVQT