Scaffold Ga0214919_10000005

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10000005
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 352754
• Total Scaffold Genes: 460
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 290 (63.04%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000354	Metagenome / Metatranscriptome	1244	Y
F001483	Metagenome / Metatranscriptome	686	Y
F005563	Metagenome / Metatranscriptome	396	Y
F007689	Metagenome / Metatranscriptome	346	Y
F035734	Metagenome	171	Y
F038097	Metagenome	166	Y
F095481	Metagenome	105	Y
F103252	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_10000005130	F005563	AGGAG	MIDYYEALKEMHQGNVVKYVGTVNGNVMSDNGASFCMCRGCIFLFDAGVIKWNKLGYMVYDPDFRYELTGETVDPRAWKPEKKTDRKEIKSKLGYSRIGRNNV
Ga0214919_10000005152	F038097	AGGA	MIIITNYTRDIQLPYEEGLLEWLQQQYPASKYQLVELE
Ga0214919_10000005225	F007689	GGAG	MKLFEATIKINGREFKDRVGANNAEEARLLLQQRHGPRAVPYLPKMIPS
Ga0214919_10000005427	F103252	AGGA	MYIEFNILNAMDDFDSLERAVAGWANTHKVPYTTKIAKGLKYRLGLNYPEHFTLFFITWASCKYQVKNAKQH
Ga0214919_10000005442	F095481	AGGA	MDYIAYFMLGFGFGIPFYYIFYYNNSMDRLERMKHDLSVKKEWCRMLAEQKTNNSKWPVGWN
Ga0214919_10000005445	F001483	GAGG	VEQLKATLLTLLEWIGSSPFRLFAVVLLCILGFGGWIVYTEKDAFLATYRAQQALPRMNGKYEEAANFLLKNTNAEMIAILEVNTLINTRKVVYLVTRGAGRDKNHDGLQVGLFSKDYNNNNDVIGLMSGKIPCSPYLKPQSLIGFVYKDYGINYMCRISVPAEPGVFIGQISVGWKEQPDNVEEMQTAMGIASSLLFNKK
Ga0214919_100000057	F000354	AGGAG	MTKVNYDDFASFDINECCDHFDSEKQSNWKKINKFIVADGQEYAHIMETKFDFDETGANEYEAFQAGVKYALTKMNIAFEAAAVDLQVCEVDLVESMGFVLVRADDEPEDFVKRVMKKPVMMVDSWV
Ga0214919_100000059	F035734	GGAGG	MTFKPFRTWLADVWRDNCEENDGWGQPRMTMKEYFAQYKWWLKREYQYQKGKGREY