Scaffold Ga0214923_10036318

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10036318
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3999
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F016963	Metagenome	243	N
F033352	Metagenome / Metatranscriptome	177	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1003631810	F005502	AGGAG	MRSLCWIAAILGMTSGQAANVMIDMRPPTKVKKMKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRVMGAKRAGVAVDTGTAVKSKKASKGRMPVVDVFAASEAQFNAMRLPRVAMVEVTK
Ga0214923_100363186	F033352	N/A	MTDLTNFRLMENIEVLACRNSAERVVKALNRGEIDQAKQLARKHEMAWHMMDREFQNLKQPHTNNDFCDDE
Ga0214923_100363189	F016963	GGAGG	VIEILPDETTHEQLLNRVKTLTRELAEAKAALAAAETRENDLIHRIRSGL