Scaffold Ga0214923_10028870

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10028870
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4676
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039993	Metagenome / Metatranscriptome	162	Y
F039994	Metagenome	162	N
F096882	Metagenome / Metatranscriptome	104	N
F102824	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1002887012	F096882	AGG	MQGKEQKVQRKNWVFMAHNKRSVSQSIKAWRALERALNDLDSFEACAKWVIDNPQISKKLSGAGLMAVMAEDLKKKKH
Ga0214923_100288702	F102824	N/A	MTPVRVQREDGKWRVTTMAGNPIGPRLWGAVPPNGLPSIDDLFEDKGKAQDAADLWNAYAMWCQQHSGKRKRK
Ga0214923_100288704	F039993	N/A	MKLALAWICYWIGDFISITIMRYGYGYSLYNKLMLLSSDLDDKGVIWK
Ga0214923_100288707	F039994	AGCAG	MENPPTISEMGEAASEIVWRVMGNGSAKSAYGEWFWKDKPTYDYHITRCIKHAVTAQQQIHLNHPCPDESGENALDHLERAVVRALFAWMQLKKGLPRL