Scaffold Ga0214923_10016368

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10016368
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6956
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015583	Metagenome / Metatranscriptome	253	Y
F047642	Metagenome	149	Y
F102622	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1001636813	F015583	GGAGG	MRFWIACVVMLFAVAAQADTVVVRGRAFVSAQEHATIIARRGALVHSQCSQTEGIGTGSTPEQARRNCCFFGQRQIVEEGVAYSPATRRYYAVIRYR
Ga0214923_100163683	F102622	N/A	MKRFWNSALKSLLLVRLGQELGTSSELAQAVAHGIDFFVGCISRFFP
Ga0214923_100163684	F047642	AGGAG	MDAHVNEYLAAATGLAEQTPPPAQNQTYAIGDYVSGMTCGKRWSGRIWNIEGDRLSVEIDGGWLAVSARDITH