Scaffold Ga0214923_10011110

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10011110
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9049
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005584	Metagenome	395	Y
F006138	Metagenome / Metatranscriptome	380	Y
F045612	Metagenome	152	Y
F088510	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1001111015	F045612	AGGA	MASNWTYEDFLGALSYLEAEGYIERFLDKDGHECVRICEGAEDCEI
Ga0214923_1001111016	F088510	N/A	MSSDDHSVLIEIREKVARMETRQAYILELLTDHKAKMDRIEQEAHSVKGRVWLVSTIVFGVLAAAWEIIKNRLLNH
Ga0214923_1001111017	F006138	AGGAG	MAAVTIGQQGLVFGVTSEGIGLVQSFSETRNVEKNEVRNNVGDIVGISYYNATTGYSLSVAITGAYNVTAGAALAALANATTLGTTRIDSITINKSNDAFVTVDISATGYPNVS
Ga0214923_100111109	F005584	AGG	VGGSISTSYFGTDLNYMIADLWQSVTGLGSNAVSASVSDLATTSELDVGGEVFRITQSVVVCASMVSAPVIGSLCTVSGIERMIAGFSESTDGLSYNIDLAEITT