Scaffold Ga0214923_10009946

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10009946
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9825
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (20.83%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008235	Metagenome / Metatranscriptome	336	N
F016369	Metagenome	247	Y
F016959	Metagenome / Metatranscriptome	243	N
F025652	Metagenome	200	N
F040095	Metagenome / Metatranscriptome	162	Y
F055722	Metagenome	138	N
F062754	Metagenome / Metatranscriptome	130	N
F065436	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_100099461	F065436	N/A	MKYKYTIKIHTVIDYAELENVMNDYGTKGYRVTKAEFIGDTFESGRPMKKFVVFLEQKV
Ga0214923_1000994613	F025652	N/A	MGPYTFFDATRRLLNNQKVPISVSECTYEKFYEFVSKEVVEYKKFNINNFNLKWVPTLPNAWRPGPFEDIDLREKMILRMGTMTKYGKFHLYGFDSLMQALQWYNNQEELQFLEDNQFRMYKFQIKSKNMIVGKTQSVYFPDINDDMDMLWISSTKLTDLNKSININSTTQSINKFIAKSDSVSNP
Ga0214923_1000994614	F055722	N/A	MNLIYQQINKHKYSIRTNNGKLVGDLIMDVDGHFYFWPEDNNGAWSSYHLRELADKMDEINKSWDEQVEKQLNK
Ga0214923_1000994617	F040095	GGA	MRLYSRKNKEDLFDIFNIDISVPKIKYGTEPGNAWGNDYPTKVIDIHFNTKFVYRKDITHWYFELTLLGFGFSITRQTGY
Ga0214923_1000994619	F008235	N/A	MINYLKNLFKKKTEPETTPVEQPKNKYYLAKYRANVSLHITYNQLDTDGYHEYRQYENIESDDNVVFLEQKNKSIKEYQEVISNINEQLKDNSSEYIIVQKVFLFKKSDFVNAKITIKDN
Ga0214923_100099462	F062754	AGTAG	MKKLTKKEQEEIKMKLAYFDKIVKDTRELIKQGYTMPNLSCLVVPIQ
Ga0214923_1000994620	F016959	N/A	MKPQWPTLKARLQHPLKDELTALHQLKQVLPLSKQAQKLYDKLSKKSIQEKD
Ga0214923_100099467	F016369	N/A	VKNNKAFTLIELVLAITILLGIIGAVVINYDSMVGNSRYFEARENLKTYLINLKHQSAFQQKEFELTFDPDYNMYSSFEDFYLLEAVTNDLKILDTSATKIVFFLDGSVQESYIVTSNLEGTITNTFIINVIGSVNYEGNTNIVIEKKESDTE