Scaffold Ga0214923_10004100

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10004100
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17883
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (57.58%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F011284	Metagenome	292	N
F012433	Metagenome / Metatranscriptome	280	N
F023585	Metagenome	209	Y
F023833	Metagenome	208	Y
F025739	Metagenome / Metatranscriptome	200	Y
F045612	Metagenome	152	Y
F079786	Metagenome	115	N
F093506	Metagenome	106	Y
F104721	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_100041001	F079786	N/A	ATRRVLTIFNEGAGNLHICPGATCTTVAYQVRLSSGDYYEVPNHQTTVTHSAVFATAGTARVTEVY
Ga0214923_1000410013	F093506	AGTAG	MATTIISNISSFDFEPDIITDNGRDGITSFQFSIVGSFSALNSYFSLDQVVVGVPDQPPGNFRVVRRNMSHIAGDTSTGLYRLQVSAEGGLGDNSLYILETSYQYQKEIVSGGVNLPSGPITVSYVCEWLSPTATITTNSQSEDVTDVQNRVRGFVANLPVQIIRNKPPSFSLGTVGYSIIGPGIDEKSINIIGSSVETAGGLFRVRASATKGQMQLVL
Ga0214923_1000410018	F025739	N/A	LVLVGGGLKIEPKLEGKETMKRLHTTANFGMPKWILGFIAGSLLGGCATTRPYDIGEVPNQDSITDYIMRWDKLDRTKATADEYRQLFGQSLKTISRLVEENERLRKRLDQ
Ga0214923_1000410020	F011284	N/A	MTSANGVEQKEVFTSKHDLHLTTLQMAAVEAMEKKYRRGVEEHGGTKLWEMPAARLVENAIEEAIDQLTYLFTLRSQMHIILELARDGCTDETLTNPRARECCNLIYTTLTGQSKPTL
Ga0214923_1000410024	F005846	N/A	MTSFPLPAKPVGSAVPASDKMFETNTAIEGKLNGWRGWFNQKTGIGYNRHGKIASNHNLMVERLANAGIKAPFIDCEIMGQRTRTGKGTIVVMDAFDPENPKPYAERMKDIEHLEAVTFDVQDNKLLRFVRLAHSKINSIWQEMNFQNNKAGEVIWEGFVMKALDDGKYPFITNPNYCSPAWQKQRIRW
Ga0214923_1000410025	F005702	GAGG	VIFGLIIFVGLVLMRGLYLIGQHLDQQNYERRRFYLSVAADLDRLDKIVAESNQPKDPELVLPTKNWAGRN
Ga0214923_1000410029	F023833	AGGA	MTKSLSDEIQEIINNGMRQAAALERGRCAELVQRLADGTEDQVIKQILNEVVTAIWRLPDGF
Ga0214923_1000410031	F023585	AGGA	MSVKRLKLVVEFHSIISKRLKELFKHLDHAKRENYKDVINHLDYSHVITKELLERAKKFQLRDMEEGKKK
Ga0214923_100041004	F045612	N/A	MSEQYTYQDFMASLKWLEAEGYIEKFYNEKNELCVRICEGAENCEV
Ga0214923_100041005	F012433	GAG	MSADQVAELQERLSIVREAIARIEERQQNIILVLERHTSELAQWSGKINTKVDTLERDAHTIKTKLWLVALISGAVFSTIWELVKIRLAR
Ga0214923_100041008	F104721	N/A	MQEKILYTRNIKLASTLATFGIPFREKEPMAVIEDADDNNRRSVTFFFNDLPSGLGGKIIDMWEKGWSAITNYDDPLAYCRAVLENRERLLDAMNNATPLVKKQFGKATLLVSKNASPELRKKLSKYL