NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10003471

Scaffold Ga0214923_10003471


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10003471 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19756
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009669Metagenome / Metatranscriptome314Y
F010817Metagenome / Metatranscriptome298Y
F014229Metagenome / Metatranscriptome264Y
F028084Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1000347111F009669N/AMNNMLSKLFGPNWRSSTSGIATVIAVTTAIAIHSDPGLVAFLPDQAEVYIVGFSKLVAVVSGIIFALTVKDANVTGGTIASTTEAEERIHPHGENI
Ga0214923_1000347112F014229GGAGMNKLNLIAVALLSVFLGACATTQTGQVDAATSVENALPYVKPAVVLACTVVLDQALSGDDRIQKAKMINHVAVIVEGLTVGTAPSPAQLQKALSDYLPAEKTHWANYISVIKDIYAQQFSRIDGNTALAIKVLNAIASGCKDATASYVE
Ga0214923_1000347114F010817N/ALKKFVNVLVLNLLLVGCTTVTPDKIQDNVASFDSSTPTNYNKDNGGLIALLDDGAVITSQAKDRYNKLIEMYKIKFKKEKAIELLADAGIKPYKDRYGNDLFLIDNEHLVYFGVMNSWLKEKVPADNIIDKTIDKINN
Ga0214923_1000347117F028084N/AMKKLILILPFFLLISCSEPNNQSRELPTKYPDSATMGSAEDATKGYNP
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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