NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10002770

Scaffold Ga0214923_10002770


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10002770 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22781
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (71.79%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011143Metagenome / Metatranscriptome294Y
F018168Metagenome236Y
F020143Metagenome225N
F026865Metagenome / Metatranscriptome196N
F033425Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_100027701F026865N/AGSIYEVATVSVATGISPKDLLEVDPAIYSAIKAILQEKYYNNKKATVRRK
Ga0214923_1000277024F033425AGGVSGTSQSIISVDNVTRDVLLHAKHEVFIGNSGVTSTNGYIMDNGDEVRLSLVDGEDLWAVTAGGTGTLHVLISKVD
Ga0214923_1000277036F011143AGGTGGMHKIEIVKKDGKKVTYDLTPSAKVAFEAEFKTGWRKRLRELELDSDLWWFAWRLEKDAGKTDLAFGDDYINQYSDVDLIYDSKNG
Ga0214923_1000277038F020143AGGMKPFYAGLPGRQRSLAATPSIYVENLDELMATMKRVEPDLQKEFRRELTKAVKPVAKLAQSFVPHEPFPGWRDVEPSYPPAWGWANDTTHRGRTYGENKRSRWKWSQTEVIRGIRVSTAKTKVQRIKGITYGVTALAIINKSVPGIIYELAGFGTSRSRGRTRRTSRNPNASESFIGKLEGTANSAGYKEKRLIYRASQQLGGQVNDNLYGVLKKYLGKEFRG
Ga0214923_100027708F018168N/AMKLDKKKKEILKSYLRSVAAATITTALALIADWNAEYAILAGAVVAPLARYFDPQDDKFGINSK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
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