Scaffold Ga0214923_10002636

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10002636
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23573
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (38.81%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016774	Metagenome / Metatranscriptome	244	Y
F024040	Metagenome / Metatranscriptome	207	Y
F026210	Metagenome / Metatranscriptome	198	Y
F027756	Metagenome / Metatranscriptome	193	N
F032548	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F044916	Metagenome / Metatranscriptome	153	Y
F104482	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000263612	F026210	GGAG	MSHFVNANPLNYDAKYPQTADTHTNDEAKIEIMEKNIGKEVMFQTDDGTQFYGKIGGVPNSEHYRVVVNRSETPWEWYVREEAVHFVIDPLLK
Ga0214923_1000263625	F016774	GAGG	MPPKKSNKIQFLTEHLASLNHWRDELLKLDKTYYHKDLEKERTIKNMINKYLDDVIEHNKKFKEKAKN
Ga0214923_1000263635	F044916	N/A	MGRKKIEKSRIQKSIEKEEKTFSAMAKKIVDAIKDEKFLREFTKQCLESLYRDDPKLFADHAKLKLNKK
Ga0214923_1000263637	F032548	N/A	MQNKTMEKAIQLLDELVFQADEDCPIECRSRHFQDILLEASEFVKEYKNQK
Ga0214923_1000263638	F027756	GGAGG	MKLEDLIDRKILYLNYPINKFAIQEGKITEISPAKKCIKINSDWHLVDNIRVIELFNQNERPKLGFGLPSKEKDAK
Ga0214923_1000263644	F034827	N/A	MKYTITSRDKEAMIDFDSLKEGEVFSFFDPESVQRGNHSVFMKIKNGSNNIVNLDDGRVFNFTDKKRITISDPDEQRGNLVYKLNAKINIIV
Ga0214923_1000263647	F104482	N/A	MTSEQYEKWANENDIFISKVYYRITFKGMGLYILNSFKFKLFPKFFYMNGKYFTECGFNWLGWIFEFQWNR
Ga0214923_1000263652	F024040	AGGAGG	MNIYVTGHNWSAKVDIDTKKLDKADWYSEACTRAVESVLDQEEKDGVELKIDDYDNFGLGVILLTWDEKNIKNEGEHRVVLTSNVLANAGRWEEYNEVKAYEEKCKEEGL