NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10001617

Scaffold Ga0214923_10001617


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10001617 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31779
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (84.21%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038244Metagenome166Y
F049630Metagenome146N
F072102Metagenome121N
F093846Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1000161727F049630GGAGMNCQVCNRVTEREGACRSCFMKVKSSLVELPDLHFESQMFITPGRSGSGKVSAERSIGVNVAALDFSLATDLLRTLHSWEVIIRTDRKLTPPALVPKEPTIDAEVQATVDFHCSHLDWSLTQEWAIEFASEVYGLHAKGRSAAKRFTEQARRIPCPTDDCKRFVVIDVENLMDDVSCFGCKQSWSVLRLIALAMSNPNKKFYLDVEAIAAWMGTTERTVYNLIKTHKVERRGSLYDLSAIIKARNKQL
Ga0214923_1000161740F093846AGGGGGVEIGIVAAVAVLALAGASLATILTNGTDDWAGQVKRAEKSRAKMKRALNK
Ga0214923_1000161756F038244AGGAGMPISSSQITVTTSPTLLVAGDGVAEGVYLHAKHTVYLGGSDITSSTGYQMDNGDKLTINNHESPIYAVAGTGSGTMQVLVVTK
Ga0214923_100016176F072102AGGMADEVIVLTGIKETQDALKQFDKAAARKFNKVINDELSRAERSADNLVIQFTNPVYGTPMRGWRKTPAANPRTRGGAGWPAWDVSEIQAGIAKSKAQGKVRGDYTTSAGALVNKSAAGAIFEVAGRRGNASRNQFIRYLSNSFGKASRLIWAVVDKDKDEIQRRVAAALEDAKKTLQTNLNSRR
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Institute for Fundamental Biomedical Research
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