Scaffold Ga0214923

Basic Information
Taxon OID	3300023179 Open in IMG/M
Scaffold ID	Ga0214923_10001440 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023179 Open in IMG/M

Scaffold ID

Ga0214923_10001440 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33787
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (37.21%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

33787

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (37.21%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009669	Metagenome / Metatranscriptome	314	Y
F010817	Metagenome / Metatranscriptome	298	Y
F016772	Metagenome / Metatranscriptome	244	Y
F020649	Metagenome / Metatranscriptome	222	Y
F028084	Metagenome / Metatranscriptome	192	Y
F034466	Metagenome / Metatranscriptome	174	Y
F080893	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000144010	F016772	GGAG	MNKLNLIAIALMGIFMVGCSTTNTGGDNKVGGTTAVENALPYIKPAVILTCTVVLEQALSPEDRVEKAKMINHASTIVESLTIGATPTPDQLQKALMDYLPAEKTHWAKYITAVKDIYAAQFVKINGDAALAVRVLNAIAAGCKDATAEYVE
Ga0214923_1000144011	F009669	N/A	MKNMLFKLFGPNWRSSTSGIITVVSVATAFAIHGDNSLVAFLPDKVEEYIIGISKLIAVVSGIIFALTVKDAAVTGGKVAQTKEAKKRIKKEIGYGENI
Ga0214923_1000144026	F020649	N/A	MFNKILKWWNDLAYYNKFFFILFTPAMLFTLWGMSDLYVNYFDELTKEDHIQFFLRIFFPVSLATLVTVLERRKRNKLIKDIKDYLDK
Ga0214923_1000144029	F034466	N/A	MDNQLRNILLNNYERNLPSKRDTEDFINNFHQYRAKKKAQEKTYYSLALILLLIITALGSIAIKETTNKLDIQTAAGQIQK
Ga0214923_1000144038	F080893	N/A	MKRTLKITNKNILEGEKANPQNCAIARAIKSKMRKDIEEVSVLPTQVILKIDNKMFVAPMPKEGANFIKRFDHGLAVNPFELNLKFKKGYALV
Ga0214923_100014406	F028084	N/A	MRLFLIFPLFLLVSCSESNYDSRELQTKYPDTPTSGAAYDITEELNKK
Ga0214923_100014408	F010817	N/A	LKRFASILALNFLIIGCTTVTPDKIQDSTASYDASTPSQYSQDNGGVIALLDNGAVITNQAKDRYNKLIEMYKVKFKKEKAIELVEDIGIKPYKDRYGNDLFLIDNEHLVYFGVMNSWLKEKVPADNIIDKTVDKINN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214923_10001440

Overview

Ecosystem & Geography

Associated Families

Sequences