Scaffold Ga0214923_10000959

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10000959
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42222
• Total Scaffold Genes: 106
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 71 (66.98%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027512	Metagenome	194	Y
F028512	Metagenome / Metatranscriptome	191	Y
F029657	Metagenome	187	N
F039483	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000095919	F027512	GAG	MSEDVIKEFLEMYGDRLPNPEHCPKEFEYYVKLYKYIKGLE
Ga0214923_1000095921	F029657	AGG	MSEYNIKEIKMKTTCKPCITIRTFFFLLRKNYNQFRKDLKDYSKVNYYACELPKYKAPKTIDEGMAEVRRVRELAKRLHDKEKEEELLKTVVQ
Ga0214923_1000095936	F028512	GGA	MNEELKAIAVEAGAPKEVLNTLWFSIFCQKFAHLLIEELEKEV
Ga0214923_100009599	F039483	AGG	MSNELDALSGVETPSLTNFWKWVKKTFTISYQDEISHYLNQSVDYVDYENRVRILQRRGM