Scaffold Ga0214923_10000931

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10000931
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42961
• Total Scaffold Genes: 80
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (32.50%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011488	Metagenome / Metatranscriptome	290	Y
F012977	Metagenome / Metatranscriptome	275	Y
F014976	Metagenome / Metatranscriptome	258	Y
F028509	Metagenome / Metatranscriptome	191	Y
F031495	Metagenome / Metatranscriptome	182	Y
F058141	Metagenome / Metatranscriptome	135	N
F058999	Metagenome / Metatranscriptome	134	N
F079652	Metagenome / Metatranscriptome	115	Y
F092059	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000093115	F031495	N/A	MTNVPILDLHGVSHSDALLIVEEWVIMWDYRVLGFQGKIITGNSTKMKTLAISALKKHKFNYQIMGDGSILVSGTI
Ga0214923_100009312	F011488	N/A	MIFISMTNEELIEELYHKAHAKGFFHELHDKVREIKKSGIRECEHRLVQRAYSELKKIKLALPTSQT
Ga0214923_1000093125	F014976	N/A	MKKFNKISRDKWNQLKNISDMFEVVGYQYGKNVVYNEVKVWCRDKWDNIRYSHVAINSNW
Ga0214923_1000093138	F058999	GGA	MLESMVGQEASVNTSPTLRAKLINVGNKCVWEVTPNRYGDRGNNRVGEKFTLPAWISGNCFWGV
Ga0214923_100009314	F092059	N/A	MWLENNFKSIMNAGLALIIGLSALGARQTHKEIKKGEAQWVLWKKHKKNK
Ga0214923_1000093141	F028509	N/A	MDKIKVSIVIQSMLTDAMVEVHHQELMDEGQERLRFVKYLILYYPDTTQNILVDFVYEQFKKFDNK
Ga0214923_1000093142	F058141	N/A	MNSLRNLITNNMKIRIENIECRFSQNQYEFVRWYPNKYFGTKAQLIAEGYQLHNIHDDNFILTKGNHTIHDSCFLSPENCFTIATIVYDKKEHCTEIKSVGNRLLGLTKKERNYFFEVYQYADKQIKKENKNKNND
Ga0214923_1000093164	F079652	N/A	MKNREIIMRRMEKVEGGIEKLQFAFRRSDWGTVDEIIQQMRDNINEAKAFVQQEPLSPGEINQY
Ga0214923_100009318	F012977	N/A	MENNFIYNLSETEYLVFKSQRDYFELFSGYEGSATNSKLATYRGGKWYFEDFHQQKLFWFLYNIYKKDFGKALKQYIRSLQDKPKTYMVTCAKRRVDIKITKMKRNMWDWFYGTFYGK