Scaffold Ga0214923_10000035

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10000035
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 168946
• Total Scaffold Genes: 237
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (14.35%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013299	Metagenome / Metatranscriptome	272	Y
F022647	Metagenome	213	Y
F035224	Metagenome / Metatranscriptome	172	Y
F065461	Metagenome / Metatranscriptome	127	Y
F067724	Metagenome	125	Y
F088887	Metagenome	109	Y
F090385	Metagenome / Metatranscriptome	108	Y
F093838	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_10000035119	F088887	GGA	MPLWLRRTTFNLMKEHYDKQNEEAEKQQNMLKNKTGSKDIARPNIAPKPNYIAKAPKK
Ga0214923_10000035204	F093838	N/A	MAKIKRKMRRKIPVLRVKIEPGANYSQLAEIPEVQKVVIEEAIYAIKDGLARNKSSISLFEVAYSDYYIELEKPKWKPTLEKVLEYYVEKEEYDKCIETRDLISKL
Ga0214923_10000035215	F035224	N/A	MACHCLHLRDATEFYSLLKQRDPDLISKMVRCVLSAAKRNKDKIDIFDITFKSMDELTFTIDKSQYREMLSNCMADMITAEEYELCAEIKKVLDKKPRKSRKKKTEVL
Ga0214923_10000035232	F013299	GGA	MLTGKKQPKRKEFIVMNSKLEYFSGLMYGGQLVWCSDYKEAKPLDDERKFKTLQYMCYGEELLLDYIS
Ga0214923_1000003529	F067724	N/A	MKNYLEAILDLITLVWFGERVPGEPVKPPTFKTTVPDDQPSEYEWNQMFRVSSLHGVNQRVFFESRR
Ga0214923_1000003531	F065461	N/A	MNKKEIRNAINKAAYQFAESLGYQIADDNDGSSVTFYKDGSGVDNTIEWARSYHETCVLNWADAQTKADADAIDAHMKPIIEHYKGQYVAR
Ga0214923_1000003567	F022647	N/A	VIKLTELLINEGPAEYPANHQPGMRVTKGGSMCANCEYWIAEGNKCNNEYWLTWHDGNENIPYPADEYCCNWWHKK
Ga0214923_100000357	F090385	N/A	MSAQTEMKVIDVLLSEAMDNGLELEVIYSALKAMREDETLTPAQAFQVAMDEWVK