Metagenome / Metatranscriptome Family F090385

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090385
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	54 residues
Representative Sequence	MSAQTDMKVISVLLDEAMEHGLEVEVIYSALKTMREDDAITPSQAFQEAMNEWVK
Number of Associated Samples	57
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	19.44 %
% of genes near scaffold ends (potentially truncated)	12.96 %
% of genes from short scaffolds (< 2000 bps)	65.74 %
Associated GOLD sequencing projects	57
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (41.667 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (19.444 % of family members)
Environment Ontology (ENVO)	Unclassified (54.630 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (75.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.01% β-sheet: 0.00% Coil/Unstructured: 46.99%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.74.1.1: Cyclin	d4eojb1	4eoj	0.79481
a.74.1.1: Cyclin	d1w98b2	1w98	0.77603
a.74.1.1: Cyclin	d2eufa1	2euf	0.75998
a.74.1.0: automated matches	d4yoza2	4yoz	0.75576
a.74.1.2: Transcription factor IIB (TFIIB), core domain	d1c9ba1	1c9b	0.75385

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF04434	SWIM	13.89
PF06745	ATPase	6.48
PF06067	DUF932	4.63
PF13481	AAA_25	2.78
PF00149	Metallophos	1.85
PF01068	DNA_ligase_A_M	1.85
PF02562	PhoH	0.93
PF02511	Thy1	0.93
PF03544	TonB_C	0.93
PF04984	Phage_sheath_1	0.93
PF14743	DNA_ligase_OB_2	0.93
PF06841	Phage_T4_gp19	0.93
PF02178	AT_hook	0.93
PF00303	Thymidylat_synt	0.93
PF14354	Lar_restr_allev	0.93
PF08423	Rad51	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG4279	Uncharacterized protein, contains SWIM-type Zn finger domain	Function unknown [S]	13.89
COG4715	Uncharacterized protein, contains SWIM-type Zn finger domain	Function unknown [S]	13.89
COG5431	Predicted nucleic acid-binding protein, contains SWIM-type Zn-finger domain	General function prediction only [R]	13.89
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	1.85
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	1.85
COG0207	Thymidylate synthase	Nucleotide transport and metabolism [F]	0.93
COG0468	RecA/RadA recombinase	Replication, recombination and repair [L]	0.93
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.93
COG1351	Thymidylate synthase ThyX, FAD-dependent family	Nucleotide transport and metabolism [F]	0.93
COG1702	Phosphate starvation-inducible protein PhoH, predicted ATPase	Signal transduction mechanisms [T]	0.93
COG1875	Predicted ribonuclease YlaK, contains NYN-type RNase and PhoH-family ATPase domains	General function prediction only [R]	0.93
COG3497	Phage tail sheath protein FI	Mobilome: prophages, transposons [X]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.33 %
Unclassified	root	N/A	41.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
Viruses	superkingdom	All Organisms → Viruses	36.11 %
cellular organisms	root	All Organisms → cellular organisms	22.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	30.56 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	12.04 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	10.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	30.56 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	10.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	30.56 %
Metazoa	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa	10.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	30.56 %
Eumetazoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa	10.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	25.00 %
Bilateria	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria	10.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	3.70 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	25.00 %
Protostomia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia	10.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
Podoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	25.00 %
Ecdysozoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa	10.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
unclassified Podoviridae	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	25.00 %
Nematoda	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda	10.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
crAss-like viruses	clade	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	25.00 %
Chromadorea	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea	10.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
unclassified Crassvirales	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses → unclassified Crassvirales	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	25.00 %
Rhabditida	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida	10.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
Podoviridae sp. ctrTa16	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses → unclassified Crassvirales → Podoviridae sp. ctrTa16	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	25.00 %
Spirurina	suborder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina	10.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
Podoviridae sp. ctrTa16	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses → unclassified Crassvirales → Podoviridae sp. ctrTa16	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	25.00 %
Spiruromorpha	infraorder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha	10.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
Podoviridae sp. ctrTa16	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses → unclassified Crassvirales → Podoviridae sp. ctrTa16	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	25.00 %
Filarioidea	superfamily	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea	10.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
Podoviridae sp. ctrTa16	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses → unclassified Crassvirales → Podoviridae sp. ctrTa16	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	25.00 %
Onchocercidae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Onchocercidae	10.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
Podoviridae sp. ctrTa16	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses → unclassified Crassvirales → Podoviridae sp. ctrTa16	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	25.00 %
Wuchereria	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Onchocercidae → Wuchereria	10.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
Podoviridae sp. ctrTa16	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses → unclassified Crassvirales → Podoviridae sp. ctrTa16	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	25.00 %
Wuchereria bancrofti	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Onchocercidae → Wuchereria → Wuchereria bancrofti	10.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
Podoviridae sp. ctrTa16	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses → unclassified Crassvirales → Podoviridae sp. ctrTa16	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000929\|NpDRAFT_10031103	Not Available	3861	Open in IMG/M
3300001843\|RCM34_1134211	Not Available	526	Open in IMG/M
3300001847\|RCM41_1003099	All Organisms → cellular organisms → Bacteria → Proteobacteria	1186	Open in IMG/M
3300001847\|RCM41_1011106	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1500	Open in IMG/M
3300002842\|contig_10174	Not Available	943	Open in IMG/M
3300005664\|Ga0073685_1000339	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	15917	Open in IMG/M
3300006484\|Ga0070744_10040723	All Organisms → Viruses → Predicted Viral	1368	Open in IMG/M
3300006484\|Ga0070744_10177707	Not Available	608	Open in IMG/M
3300006484\|Ga0070744_10234262	Not Available	520	Open in IMG/M
3300007538\|Ga0099851_1196414	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Onchocercidae → Wuchereria → Wuchereria bancrofti	736	Open in IMG/M
3300007555\|Ga0102817_1151837	Not Available	519	Open in IMG/M
3300007973\|Ga0105746_1059295	Not Available	1213	Open in IMG/M
3300007974\|Ga0105747_1033397	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Onchocercidae → Wuchereria → Wuchereria bancrofti	1464	Open in IMG/M
3300008110\|Ga0114343_1081150	Not Available	1165	Open in IMG/M
3300008113\|Ga0114346_1052415	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2029	Open in IMG/M
3300008116\|Ga0114350_1016126	Not Available	3192	Open in IMG/M
3300008116\|Ga0114350_1064443	All Organisms → Viruses → Predicted Viral	1274	Open in IMG/M
3300008117\|Ga0114351_1027584	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3744	Open in IMG/M
3300008120\|Ga0114355_1087933	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1904	Open in IMG/M
3300008120\|Ga0114355_1260030	Not Available	504	Open in IMG/M
3300008266\|Ga0114363_1001286	Not Available	15033	Open in IMG/M
3300008266\|Ga0114363_1009125	Not Available	4783	Open in IMG/M
3300008267\|Ga0114364_1002671	Not Available	11466	Open in IMG/M
3300008267\|Ga0114364_1004843	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6966	Open in IMG/M
3300008267\|Ga0114364_1019926	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2808	Open in IMG/M
3300008267\|Ga0114364_1023161	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5188	Open in IMG/M
3300008267\|Ga0114364_1030427	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2753	Open in IMG/M
3300008267\|Ga0114364_1033896	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1968	Open in IMG/M
3300008267\|Ga0114364_1034259	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1954	Open in IMG/M
3300008267\|Ga0114364_1040808	All Organisms → cellular organisms → Bacteria	1733	Open in IMG/M
3300008448\|Ga0114876_1017350	Not Available	3834	Open in IMG/M
3300008448\|Ga0114876_1023862	All Organisms → cellular organisms → Bacteria	3112	Open in IMG/M
3300008448\|Ga0114876_1027122	All Organisms → Viruses → Predicted Viral	2862	Open in IMG/M
3300008448\|Ga0114876_1114920	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses → unclassified Crassvirales → Podoviridae sp. ctrTa16	1043	Open in IMG/M
3300008448\|Ga0114876_1140035	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	898	Open in IMG/M
3300008448\|Ga0114876_1147334	Not Available	863	Open in IMG/M
3300008450\|Ga0114880_1000671	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	21084	Open in IMG/M
3300008450\|Ga0114880_1006918	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Onchocercidae → Wuchereria → Wuchereria bancrofti	5819	Open in IMG/M
3300008450\|Ga0114880_1009416	All Organisms → Viruses → Predicted Viral	4871	Open in IMG/M
3300008450\|Ga0114880_1185093	Not Available	714	Open in IMG/M
3300009026\|Ga0102829_1122106	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	823	Open in IMG/M
3300009716\|Ga0116191_1243693	Not Available	694	Open in IMG/M
3300011335\|Ga0153698_1031	Not Available	58551	Open in IMG/M
3300011335\|Ga0153698_1328	Not Available	20496	Open in IMG/M
3300012665\|Ga0157210_1033128	Not Available	806	Open in IMG/M
3300012776\|Ga0138275_1308635	All Organisms → cellular organisms → Bacteria	1219	Open in IMG/M
3300013295\|Ga0170791_12924309	Not Available	889	Open in IMG/M
3300013372\|Ga0177922_10859267	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1394	Open in IMG/M
3300014050\|Ga0119952_1011552	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3425	Open in IMG/M
(restricted) 3300014720\|Ga0172376_10127582	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Onchocercidae → Wuchereria → Wuchereria bancrofti	1743	Open in IMG/M
3300014819\|Ga0119954_1045721	Not Available	770	Open in IMG/M
3300017761\|Ga0181356_1097049	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	963	Open in IMG/M
3300017761\|Ga0181356_1116742	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	855	Open in IMG/M
3300017766\|Ga0181343_1095786	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300017774\|Ga0181358_1248151	Not Available	561	Open in IMG/M
3300017777\|Ga0181357_1032316	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2063	Open in IMG/M
3300019784\|Ga0181359_1000211	Not Available	12265	Open in IMG/M
3300019784\|Ga0181359_1000436	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	9200	Open in IMG/M
3300019784\|Ga0181359_1032565	All Organisms → Viruses → Predicted Viral	2014	Open in IMG/M
3300019784\|Ga0181359_1047605	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1656	Open in IMG/M
3300019784\|Ga0181359_1101077	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Onchocercidae → Wuchereria → Wuchereria bancrofti	1057	Open in IMG/M
3300019784\|Ga0181359_1106522	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1021	Open in IMG/M
3300019784\|Ga0181359_1120631	Not Available	938	Open in IMG/M
3300019784\|Ga0181359_1138465	Not Available	850	Open in IMG/M
3300019784\|Ga0181359_1155364	Not Available	780	Open in IMG/M
3300019784\|Ga0181359_1194960	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Onchocercidae → Wuchereria → Wuchereria bancrofti	657	Open in IMG/M
3300020074\|Ga0194113_10812354	Not Available	639	Open in IMG/M
3300020161\|Ga0211726_10516767	All Organisms → cellular organisms → Bacteria	1263	Open in IMG/M
3300020183\|Ga0194115_10044793	All Organisms → cellular organisms → Bacteria	2875	Open in IMG/M
3300020197\|Ga0194128_10124863	All Organisms → cellular organisms → Bacteria	1526	Open in IMG/M
3300021091\|Ga0194133_10080277	Not Available	2599	Open in IMG/M
3300021961\|Ga0222714_10177964	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1248	Open in IMG/M
3300022063\|Ga0212029_1052369	Not Available	592	Open in IMG/M
3300022179\|Ga0181353_1067927	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Onchocercidae → Wuchereria → Wuchereria bancrofti	914	Open in IMG/M
3300022407\|Ga0181351_1041885	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1931	Open in IMG/M
3300022407\|Ga0181351_1091394	Not Available	1193	Open in IMG/M
3300022407\|Ga0181351_1141757	Not Available	876	Open in IMG/M
3300022407\|Ga0181351_1172272	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Onchocercidae → Wuchereria → Wuchereria bancrofti	755	Open in IMG/M
3300022752\|Ga0214917_10069144	All Organisms → cellular organisms → Bacteria	2234	Open in IMG/M
3300022752\|Ga0214917_10106864	All Organisms → cellular organisms → Bacteria	1610	Open in IMG/M
3300022752\|Ga0214917_10239971	Not Available	855	Open in IMG/M
3300023174\|Ga0214921_10000180	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	124427	Open in IMG/M
3300023174\|Ga0214921_10004723	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	19818	Open in IMG/M
3300023174\|Ga0214921_10015003	All Organisms → cellular organisms → Bacteria	8891	Open in IMG/M
3300023174\|Ga0214921_10070491	All Organisms → Viruses → Predicted Viral	2855	Open in IMG/M
3300023174\|Ga0214921_10147002	All Organisms → cellular organisms → Bacteria	1612	Open in IMG/M
3300023174\|Ga0214921_10252127	Not Available	1034	Open in IMG/M
3300023179\|Ga0214923_10000035	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	168946	Open in IMG/M
3300023179\|Ga0214923_10339559	Not Available	797	Open in IMG/M
3300023184\|Ga0214919_10000053	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	170255	Open in IMG/M
3300023184\|Ga0214919_10101666	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2446	Open in IMG/M
3300024346\|Ga0244775_10292156	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1352	Open in IMG/M
3300024346\|Ga0244775_11250933	Not Available	576	Open in IMG/M
3300025646\|Ga0208161_1046507	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Onchocercidae → Wuchereria → Wuchereria bancrofti	1415	Open in IMG/M
3300027808\|Ga0209354_10293900	Not Available	647	Open in IMG/M
3300027899\|Ga0209668_10018120	All Organisms → cellular organisms → Bacteria	3435	Open in IMG/M
3300027899\|Ga0209668_11129475	Not Available	527	Open in IMG/M
3300028025\|Ga0247723_1028152	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1803	Open in IMG/M
3300028025\|Ga0247723_1095466	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	758	Open in IMG/M
3300031787\|Ga0315900_10497178	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Onchocercidae → Wuchereria → Wuchereria bancrofti	926	Open in IMG/M
3300031787\|Ga0315900_10578601	Not Available	828	Open in IMG/M
3300031787\|Ga0315900_10728730	Not Available	697	Open in IMG/M
3300031963\|Ga0315901_11048462	Not Available	565	Open in IMG/M
3300031963\|Ga0315901_11053466	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Onchocercidae → Wuchereria → Wuchereria bancrofti	563	Open in IMG/M
3300032093\|Ga0315902_10523603	Not Available	1023	Open in IMG/M
3300034103\|Ga0335030_0027009	Not Available	4388	Open in IMG/M
3300034106\|Ga0335036_0472761	Not Available	788	Open in IMG/M
3300034106\|Ga0335036_0883811	Not Available	509	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.07%
Engineered	Engineered	0.93%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	97.22%
Terrestrial	Environmental → Terrestrial	1.85%
Wastewater	Engineered → Wastewater	0.93%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	84.26%
Marine	Environmental → Aquatic → Marine	12.96%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.85%
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	0.93%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	50.00%
Lentic	Environmental → Aquatic → Freshwater → Lentic	21.30%
Lotic	Environmental → Aquatic → Freshwater → Lotic	6.48%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	5.56%
Unclassified	Environmental → Aquatic → Marine → Unclassified	5.56%
Coastal	Environmental → Aquatic → Marine → Coastal	4.63%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.85%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.85%
Pond	Environmental → Aquatic → Freshwater → Pond	0.93%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	0.93%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	50.00%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	19.44%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	6.48%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	5.56%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	5.56%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	4.63%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	1.85%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.85%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Freshwater → Pond → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	0.93%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	19.44%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	15.74%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	15.74%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	12.96%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	5.56%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.63%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	4.63%
Marine Plankton	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton	2.78%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	2.78%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	2.78%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	1.85%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	1.85%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.85%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	1.85%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.93%
Aquatic	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Aquatic	0.93%
Stormwater Retention Pond	Environmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond	0.93%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.93%
Freshwater And Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine	0.93%
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000929	Marine plume microbial communities from the Columbia River - 15 PSU	Environmental	Open in IMG/M
3300001843	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM34, ROCA_DNA218_2.0um_bLM_C_2b	Environmental	Open in IMG/M
3300001847	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM41. ROCA_DNA251_0.2um_TAP-D_2a	Environmental	Open in IMG/M
3300002842	Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Junction Rte 99 and John Tyler Highway	Environmental	Open in IMG/M
3300005664	Freshwater viral communities from Emiquon reservoir, Havana, Illinois, USA	Environmental	Open in IMG/M
3300006484	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535	Environmental	Open in IMG/M
3300007538	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG	Environmental	Open in IMG/M
3300007555	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555	Environmental	Open in IMG/M
3300007973	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um	Environmental	Open in IMG/M
3300007974	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460C_0.2um	Environmental	Open in IMG/M
3300008110	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA	Environmental	Open in IMG/M
3300008113	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA	Environmental	Open in IMG/M
3300008116	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA	Environmental	Open in IMG/M
3300008117	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA	Environmental	Open in IMG/M
3300008120	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA	Environmental	Open in IMG/M
3300008266	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA	Environmental	Open in IMG/M
3300008267	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR	Environmental	Open in IMG/M
3300008448	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs	Environmental	Open in IMG/M
3300008450	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs	Environmental	Open in IMG/M
3300009026	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575	Environmental	Open in IMG/M
3300009716	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC111_MetaG	Engineered	Open in IMG/M
3300011335	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman	Environmental	Open in IMG/M
3300012665	Freshwater microbial communities from Talbot River, Ontario, Canada - S11	Environmental	Open in IMG/M
3300012776	Freshwater microbial communities from Lake Montjoie, Canada - M_130207_X_mt (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300013295	northern Canada Lakes metatranscriptome co-assembly	Environmental	Open in IMG/M
3300013372	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs	Environmental	Open in IMG/M
3300014050	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007B	Environmental	Open in IMG/M
3300014720 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_35m	Environmental	Open in IMG/M
3300014819	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A	Environmental	Open in IMG/M
3300017761	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N	Environmental	Open in IMG/M
3300017766	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D	Environmental	Open in IMG/M
3300017774	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D	Environmental	Open in IMG/M
3300017777	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N	Environmental	Open in IMG/M
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental	Open in IMG/M
3300020074	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m	Environmental	Open in IMG/M
3300020161	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1	Environmental	Open in IMG/M
3300020183	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface	Environmental	Open in IMG/M
3300020197	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015037 Kigoma Deep Cast 65m	Environmental	Open in IMG/M
3300021091	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40m	Environmental	Open in IMG/M
3300021961	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D	Environmental	Open in IMG/M
3300022063	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v2)	Environmental	Open in IMG/M
3300022179	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N	Environmental	Open in IMG/M
3300022407	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D	Environmental	Open in IMG/M
3300022752	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB	Environmental	Open in IMG/M
3300023174	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505	Environmental	Open in IMG/M
3300023179	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510	Environmental	Open in IMG/M
3300023184	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503	Environmental	Open in IMG/M
3300024346	Whole water sample coassembly	Environmental	Open in IMG/M
3300025646	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300027808	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)	Environmental	Open in IMG/M
3300027899	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)	Environmental	Open in IMG/M
3300028025	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC	Environmental	Open in IMG/M
3300031787	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114	Environmental	Open in IMG/M
3300031963	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116	Environmental	Open in IMG/M
3300032093	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117	Environmental	Open in IMG/M
3300034103	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119	Environmental	Open in IMG/M
3300034106	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
NpDRAFT_100311031	3300000929	Freshwater And Marine	MSANTDMKVIGVLLDEAMEHGLELEVIYSALKTMREDETITPAQAFQSAMDEWIR*
RCM34_11342112	3300001843	Marine Plankton	MSAQTEMKVISVLLDEAMEQGLEIEVIYNALKLMREDDALTPAQAFQEAMNEWIK*
RCM41_10030992	3300001847	Marine Plankton	MSAQTDMKVISVLLDEAMEQGLEVEIIYQALKAMRDDDALTPAQAFQEAMNEWIK*
RCM41_10111064	3300001847	Marine Plankton	MSAQTEMKVISVLLDEAMEQGLEIEIIYQALKMMREDDALTPAQAFQEAMNEWIK*
contig_101742	3300002842	Stormwater Retention Pond	MSAQTDMKVISVLLDEAMEMGLEVEVIYSALKTMREDDSITPAQAFQEAINEWVK*
Ga0073685_10003399	3300005664	Aquatic	MSAQTDMAVISTLLDEVSEQGLEIEVIYTALKTMREDDAISPVAAFQYAVDEWIK*
Ga0070744_100407231	3300006484	Estuarine	MSTQTEMKVISVLLDEAMEQGLELEIIYSALKAMREDDAITPSQAMQHAMNDWIK*
Ga0070744_101777072	3300006484	Estuarine	TDMKVIGVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQVGMDEWVR*
Ga0070744_102342621	3300006484	Estuarine	MSAQTDMKVISVLLDEAMAEGLEVEVIYSALKTMREDDAITPSQAMQVAMDEWIK*
Ga0099851_11964143	3300007538	Aqueous	MSVSTDMKVISVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQIGMDEWVR*
Ga0102817_11518372	3300007555	Estuarine	MSAQTEMKVISVLLDEAMEQGLELEIIYSALKAMREDDAITPSQAMQHAMNDWIK*
Ga0105746_10592953	3300007973	Estuary Water	MSANTDMKVIGVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQVGMDEWIR*
Ga0105747_10333974	3300007974	Estuary Water	MSANTDMKVISVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQIGMDEWIR*
Ga0114343_10811502	3300008110	Freshwater, Plankton	MSASTDMKVIEVLLDEAMEHGMEIEVIYSALKAVKEYPEITPAQAFQYGMGEWVK*
Ga0114346_10524153	3300008113	Freshwater, Plankton	MSAQTDMKVISVLLEEAMEHGLEVEVIYEALKTMREDDSITPAQAFQLAMDEWVK*
Ga0114350_10161266	3300008116	Freshwater, Plankton	MKVIGVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQIGMDEWIR*
Ga0114350_10644434	3300008116	Freshwater, Plankton	MKVISVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQIGMDEWIR*
Ga0114351_10275849	3300008117	Freshwater, Plankton	MSAQTEMKVISVLLDEAMEQGLEIEIIYQALKMMREDDALTPSQAMQEAMNEWIK*
Ga0114355_10879331	3300008120	Freshwater, Plankton	VISVLLDEAMEQGLEIEIIYQALKLMREDDALTPSQAMQEAMNEWIK*
Ga0114355_12600302	3300008120	Freshwater, Plankton	MSAQTEMKVISVLLDEAMEHGLEVEVIYQALKLMREDDALTPSQAMQEAMNEWIK*
Ga0114363_100128622	3300008266	Freshwater, Plankton	MSAQTEMKVIDVLLSEAMDNGLELEVIYSALKAMREDETLTPAQAFQVAMDEWVK*
Ga0114363_100912511	3300008266	Freshwater, Plankton	MSAQTDMKVISVLLDEAMENGLEVEVIYSALKLMREDDAITPAQAFQEAINEWVK*
Ga0114364_100267129	3300008267	Freshwater, Plankton	MSAQTDMKVISVLLDEAMEQGLEVEVIYNALKLMREDDALTPSQAFQEAMNEWVK*
Ga0114364_100484319	3300008267	Freshwater, Plankton	MSAQTDMKVISVLLDEAMEHGLEVEVIYQALRLMREDDALTPSQAFQEAMNEWVK*
Ga0114364_10199267	3300008267	Freshwater, Plankton	KMSAQTDMKVISVLLDEAMEQGLEVEVIYAALKTMREDDSITPAQAFQVAMDEWVK*
Ga0114364_102316111	3300008267	Freshwater, Plankton	MSAQTEMKVISVLLDEAMEQGLEIEIIYQALKLMREDDALTPSQAMQEAMNEWIK*
Ga0114364_10304273	3300008267	Freshwater, Plankton	MSAQTDMKVISVLLDEAMEMGLEVEVIYTALKTMREDDSITPSQAFQVAMDEWIK*
Ga0114364_10338963	3300008267	Freshwater, Plankton	MSAQTEMKVIDVLLSEAMDHGLELEVIYSALKAMREDETLTPAQAFQIAMDEWVK*
Ga0114364_10342592	3300008267	Freshwater, Plankton	MSAQTDMKVISVLLDEAMEHGLEVEVIYQALKLMREDDALTPSQAFQEAMNEWVK*
Ga0114364_10408084	3300008267	Freshwater, Plankton	MSAQTDMKVISVLLDEAMEMGLEIEVIYEALKTMREDDSITPAQAFQVAMDEWVK*
Ga0114876_10173505	3300008448	Freshwater Lake	MNTEMKVISVLLDEALEQGLEVEVIYDALKLMREDDSLSPAQAFQEAINEWVK*
Ga0114876_10238624	3300008448	Freshwater Lake	MSAQTDMKVISVLLDEALEHGLELEVIYAALKSMQEDNSLTPAQAFQEGMNEWIR*
Ga0114876_10271227	3300008448	Freshwater Lake	MSAQTDMKVISVLLDEAMEQGLEVEVIYAALKTMREDDSITPAQAFQVAMDEWVK*
Ga0114876_11149202	3300008448	Freshwater Lake	MSAQTDMKVISVLLDEALEHGLELEVIYTALKAMREDDALTPAQAFQEAMNEWVK*
Ga0114876_11400352	3300008448	Freshwater Lake	MSAQTEMKVISVLLDEAMENGLEVEVIYQALRLMREDDALTPSQAFQEAMNEWVK*
Ga0114876_11473344	3300008448	Freshwater Lake	MNTEMKVISVLLDEALDQGLELEVIYGALKLMREDDSLTPAQAFQEAMNEWVK*
Ga0114880_100067139	3300008450	Freshwater Lake	MSAQTDMKVISVLLDEAMEQGLEIEVIYQALKTMREDDAITPAQAMQVAMDEWVK*
Ga0114880_100691817	3300008450	Freshwater Lake	IDVLLSEAMDNGLELEVIYSALKAMREDETLTPAQAFQVAMDEWVK*
Ga0114880_100941614	3300008450	Freshwater Lake	MSAQTEMKVIDVLLSEAMDNGLELEVIYSALKAMREDETLTPAQAF
Ga0114880_11850931	3300008450	Freshwater Lake	IDVLLSEAMDNGLELEVIYSALKAMREDETLTPAQAFQIAMDEWVK*
Ga0102829_11221062	3300009026	Estuarine	MSAQTDMKVISILLDEAMGEGLEVEVIYSALKTMREDDSITPAQAMQVAMDEWVK*
Ga0116191_12436932	3300009716	Anaerobic Digestor Sludge	MAQNTDMKVIGVLLDEAMDNGLEVEVIYYALKAMQEDPTLSPAQAFQAGMDEWVK*
Ga0153698_103185	3300011335	Freshwater	MSAQTEMKVISVLLDEAMEQGLEVEVIYNALKLMREDDALTPSQAFQEAMNEWVK*
Ga0153698_132813	3300011335	Freshwater	MAKLNTMSTQQELKVIGVLLEEAMEYGLEAEVVYSALKAMQEDNTLHPSQAVQYAMEDWIK*
Ga0157210_10331283	3300012665	Freshwater	MSAQTDMKVISVLLDEAMEHGLEVEVIYSALKTMREDDAITPAQAVQHAMDEWVK*
Ga0138275_13086351	3300012776	Freshwater Lake	MSAQTDMKVISVLLDEAMAEGLEVEVIYSALKTMREDDAITPSQAMQVAMDEWVK*
Ga0170791_129243091	3300013295	Freshwater	MSAQTEMKVISVLLDEAMNEGLEVEVIYSALKVMREEETMTPSQAFQEAMNEWVK*
Ga0177922_108592671	3300013372	Freshwater	MASAQVEMKVISVLLDEAMDSGLEVEVIYSALKVMREDDAITPAQAFQYAMDEWVK*
Ga0119952_10115525	3300014050	Freshwater	MSAQTDMKVISVLLDEAMEHGLEVEVIYEALKTMREDDAITPSQAFQLAMDEWVK*
(restricted) Ga0172376_101275824	3300014720	Freshwater	MKVIGVLLDEAMEHGLELEVIYSALKAMHEDETISPAQAFQIGMDEWIR*
Ga0119954_10457211	3300014819	Freshwater	MSTQTDMKVISILLDEAMAEGLEVEVIYSALKTMRDDDAITPAQAFQEAMNEWVK*
Ga0181356_10970491	3300017761	Freshwater Lake	NKMSAQTDMKVISVLLDEAMEHGLEIEVIYSALKTMREDDAITPAQAMQYAMDEWIK
Ga0181356_11167423	3300017761	Freshwater Lake	MSAQTDMKVISVLLDEAMEHGLEIEVIYSALKTMREDDAITPAQAVQYAMDEWVK
Ga0181343_10957862	3300017766	Freshwater Lake	MSAQTDMKVISVLLDEAMEQGLEVEVIYNALKLMREDDAITPAQAFQEAMNEWVK
Ga0181358_12481513	3300017774	Freshwater Lake	MSAQTDMKVISVLLDEAMEHGLEIEVIYSALKTMREDDAITPAQAV
Ga0181357_10323165	3300017777	Freshwater Lake	AQTDMKVISVLLDEAMEMGLEVEVIYTALKTMREDDSITPSQAFQVAMDEWIK
Ga0181359_100021110	3300019784	Freshwater Lake	MASAQVEMKVISVLLDEAMDSGLEVEVIYSALKVMREDDAITPAQAFQYAMDEWVK
Ga0181359_10004364	3300019784	Freshwater Lake	MASAQTEMKVISVLLDEAMDNGLEVEVIYAALKAMREDDAITPAQAFQVGMDEWVK
Ga0181359_10325653	3300019784	Freshwater Lake	MSAQTDMKVISVLLDEAMEHGLEIEVIYSALKTMREDDAITPAQAVQHAMDEWVK
Ga0181359_10476052	3300019784	Freshwater Lake	MSAQTEMKVISVLLDEAMEQGLELEIIYSALKAMREDDAITPSQAMQHAMNDWIK
Ga0181359_11010774	3300019784	Freshwater Lake	MSASTDMKVISVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQIGMDEWIR
Ga0181359_11065224	3300019784	Freshwater Lake	TDMKVISVLLDEAMEHGLEIEVIYSALKTMREDDAITPAQAVQHAMDEWVK
Ga0181359_11206312	3300019784	Freshwater Lake	MSANTDMKVISVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQIGMDEWIR
Ga0181359_11384651	3300019784	Freshwater Lake	MSAQTDMKVISVLLDEAMEMGLEVEVIYTALKTMREDDSITPSQAFQVAMDEWIK
Ga0181359_11553643	3300019784	Freshwater Lake	MSAQTDMKVISVLLDEAMEQGLEIEVIYSALKTMREDDAITPAQAFQEAMNEWIK
Ga0181359_11949602	3300019784	Freshwater Lake	MSANTDMKVIGVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQIGMDEWIR
Ga0194113_108123542	3300020074	Freshwater Lake	MSINTDMKVIGVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQTGMDEWIR
Ga0211726_105167671	3300020161	Freshwater	MASAQVEMKVISVLLDEAMDSGLEVEVIYSALKLMREDDAITPAQAFQYAMDEWVK
Ga0194115_100447934	3300020183	Freshwater Lake	MSINTDMKVISVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQIGMDEWVK
Ga0194128_101248634	3300020197	Freshwater Lake	MSTNIDMKVISVLLDEAMKHGLELEVIYSALKAMREDETISPAQAFQVGMDEWIR
Ga0194133_100802778	3300021091	Freshwater Lake	MKVIGVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQTGMDEWIR
Ga0222714_101779643	3300021961	Estuarine Water	MSAQTEMKVIDVLLSEAMDHGLELEVIHSALKAMREDETLTPAQAFQVAMDEWVK
Ga0212029_10523691	3300022063	Aqueous	MSVSTDMKVISVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQIGMDEW
Ga0181353_10679272	3300022179	Freshwater Lake	MSANTDMKVIGVLLDEAMEHGLELEVIYSALKAMHEDETISPAQAFQIGMDEWIR
Ga0181351_10418855	3300022407	Freshwater Lake	MSANTDMKVIGVLLDEAMEHGLELEVIYSALKTMREDETITPAQAFQSAMDEWIR
Ga0181351_10913942	3300022407	Freshwater Lake	MSANTDMKVIGVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQVGMDEWIR
Ga0181351_11417574	3300022407	Freshwater Lake	MSAQTEMKVISVLLDEAMEHGLELEVIHSSLKLMREDETLTPAQAFQLAMDEWIR
Ga0181351_11722723	3300022407	Freshwater Lake	MSAQTDMKVISVLLDEAMEHGLEVEVIYAALKAIKEDETISPAQAFQIGCNEWIK
Ga0214917_100691445	3300022752	Freshwater	MSAQTEMKVISVLLDEAMEHGLEVEVIYQALKLMREDDALTPSQTMQEAMNEWVK
Ga0214917_101068642	3300022752	Freshwater	MSASTDMKVISVLLDEAMEHGLELEVIYSALKAMREDETITPAQAFQMGMDEWIR
Ga0214917_102399712	3300022752	Freshwater	MSAQTDMKVISVLLDEAMENGLEVEVIYSALKTMREDDAITPAQAMQVAMDEWVK
Ga0214921_10000180123	3300023174	Freshwater	MSAQTDMKVISVLLDEAMEHGLEVEVIYEALKTMREDDAITPAQAMQVAMDEWVK
Ga0214921_1000472338	3300023174	Freshwater	MSAQTDMKVISVLLDEAMEHGLEVEVIYSALKTMREDDAITPSQAMQVAMDEWVK
Ga0214921_100150039	3300023174	Freshwater	MSAQTDMKVISILLDEAMAEGLEVEVIYSALKTMRDDDAITPAQAFQEAMNEWVK
Ga0214921_100704916	3300023174	Freshwater	MSAQTDMKVISVLLEEAMNEGLEVEVIYSALKTMREDDAITPSQAMQIAMDEWVK
Ga0214921_101470022	3300023174	Freshwater	MSAQTDMKVISVLLEEAMNEGLEVEVIYSALKIMREDDSITPSQAMQEAMNEWVK
Ga0214921_102521272	3300023174	Freshwater	MSAQTDMKVISVLLDEAMEHGLEVEVIYSALKTMREDDAITPSQAFQEAMNEWVK
Ga0214923_100000357	3300023179	Freshwater	MSAQTEMKVIDVLLSEAMDNGLELEVIYSALKAMREDETLTPAQAFQVAMDEWVK
Ga0214923_103395592	3300023179	Freshwater	MSAQTDMKVISVLLDEAMAEGLEVEVIYSALKTMREDDAITPSQAMQVAMDEWIK
Ga0214919_10000053212	3300023184	Freshwater	MSAQTEMKVISVLLDEAMNEGLEVEVIYSALKVMREEETMTPSQAFQEAMNEWVK
Ga0214919_101016665	3300023184	Freshwater	MIKIKHMSAQTEMKVISILLDEAMECGLEVEVIYSALKLMREDDAITPSQAMQEAMNEWV
Ga0244775_102921562	3300024346	Estuarine	MSTQTEMKVISVLLDEAMEQGLELEIIYSALKAMREDDAITPSQAMQHAMNDWIK
Ga0244775_112509332	3300024346	Estuarine	MSAQTDMKVISILLDEAMGEGLEVEVIYSALKTMREDDSITPAQAMQVAMDEWVK
Ga0208161_10465074	3300025646	Aqueous	MSVSTDMKVISVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQIGMDEWVR
Ga0209354_102939001	3300027808	Freshwater Lake	MASAQVEMKVISVLLDEAMDSGLEVEVIYSALKVMREDDAITPAQA
Ga0209668_100181207	3300027899	Freshwater Lake Sediment	MSAQTDMKVISVLLDEAMEQGLEIEVIYSALKTMREDDAIGPLQAMQIAMDEWIK
Ga0209668_111294752	3300027899	Freshwater Lake Sediment	MSAQTEMKVIDVLLSEAMDHGLELEVIYSALKAMREDETLTPAQAFQIAMDEWVK
Ga0247723_10281523	3300028025	Deep Subsurface Sediment	MASAQTEMKVINVLLDEAMDSGLEVEVIYSALKMMREDDAITPAQAFQYAMDEWVK
Ga0247723_10954663	3300028025	Deep Subsurface Sediment	MSAQTDMKVISVLLDEAMEHGLEVEVIYSALKTMREDDAITPAQAVQHAMDEWVK
Ga0315900_104971783	3300031787	Freshwater	MKVIGVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQIGMDEWIR
Ga0315900_105786012	3300031787	Freshwater	MSAQTDMKVISVLLDEALEHGLELEVIYTALKLMREDDALTPAQAFQESMNEWVK
Ga0315900_107287303	3300031787	Freshwater	MSAQTDMKVISVLLDEALEHGLELEVIYTALKAMREDDALTPAQAFQEAMNEWVK
Ga0315901_110484622	3300031963	Freshwater	MNTEMKVISVLLDEALDQGLELEVIYGALKLMREDDSLTPAQAFQEAMNEWVK
Ga0315901_110534661	3300031963	Freshwater	MSASTDMKVISVLLDEAMEHGLELEVIYSALKAMREDETISPAQALQIGMDEWIR
Ga0315902_105236032	3300032093	Freshwater	MNTEMKVISVLLDEALEQGLEVEVIYDALKLMREDDSLSPAQAFQEAINEWVK
Ga0335030_0027009_3453_3602	3300034103	Freshwater	MKVISVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQIGMDEWIR
Ga0335036_0472761_86_253	3300034106	Freshwater	MSAQTDMKVISVLLDEAMEHGLEVEVIYAALKAIKEDETISPAQAFQFGMDEWVK
Ga0335036_0883811_266_436	3300034106	Freshwater	MASAQVEMKVISVLLDEAMDSGLEVEAIYSALKVMREDDAITPAQAFQYAMDEWVK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters