NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10063806

Scaffold Ga0214921_10063806


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10063806 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3082
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011077Metagenome / Metatranscriptome295Y
F020851Metagenome / Metatranscriptome221Y
F037701Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100638065F020851N/AMSEDIVDLAISMVEIDTGMQLPLEDREAMKQRILARLEDINQ
Ga0214921_100638066F037701GGAMIKSKEWRVSNKVWLGIGFAPRRIALGFSVDRFNANIDFLWFWVSLEY
Ga0214921_100638067F011077GAGMMADNLTWAEEDVNLWKGWTYSPEKNRYYFNDIGNESLAAFWADEFLNQAYL

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