NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10058728

Scaffold Ga0214921_10058728


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10058728 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3280
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F002060Metagenome / Metatranscriptome597Y
F012975Metagenome / Metatranscriptome275Y
F014140Metagenome / Metatranscriptome265Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100587282F014140N/AMNTYKVKMDVELEVTAFNETDARDYVGDIFNIDDEIKKVNIVKITEKAK
Ga0214921_100587285F012975GGAGVLNLTLKGVEVFMERSRTKSQESFWENYDLLIWKQSAGGFTDVKGMFRKNQWGVTERIPVNENGIWKLPTKYVRHFR
Ga0214921_100587287F000473AGGMEFINKDKDHFKYGINQWTGEPNKPVFYNKEMALAVRGIKKPVVNLQMDIVKYPEFLCLRLYEDNFIQYTGNNKEMVIDYLQKVKKLIESYGVRCELEGVPSQNVLGQGL
Ga0214921_100587288F000671AGGAMEKILCYCCNKSKNKLAVKKSSLLPINLFLCETCISSKFEPRWVVILSGRQLGPEAVKDFIVKKRYIGADIAASELFV
Ga0214921_100587289F002060N/AMQINYLSILIAISAALVSGMGTAMIASFRDSKKEQRRRVERDQDLLKMDLKDLKIELYKIEKELTEWKDKYYNAIQELIEIKAELEATLIELGHFEHHIDELDR
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