NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10056325

Scaffold Ga0214921_10056325


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10056325 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3382
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F001562Metagenome / Metatranscriptome670Y
F004840Metagenome / Metatranscriptome421Y
F007263Metagenome / Metatranscriptome354Y
F011299Metagenome / Metatranscriptome292Y
F050376Metagenome / Metatranscriptome145Y
F085708Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1005632510F050376AGGMTLDEYKALVEAQRKASLLKAIATMSEANDKMSSLFNTKEAD
Ga0214921_1005632511F085708GGAMTTNRILTTLVQLAIGIPALYMARLMWREIVADFKEWDKSH
Ga0214921_100563252F011299AGGMMTRKDYVAVAEILKFASDKAHPALFSKIVNDFAVMFAKDNERFDVNRFHEASGYNVPKFTSR
Ga0214921_100563253F004840GGAGMYKITIAYDSSTPHWTKPYNDEMEAWKDFFSFTDWGFANEFSTVNLYTPAGKCYTKVFYREGRKVVTK
Ga0214921_100563255F007263AGGMIKEYIDENEFYFIKDEIKICCDEQQFIHVCKAHGEQQGCYFCEFDYSKDCECEG
Ga0214921_100563257F001562GAGGMKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHEDYLAELENE
Ga0214921_100563259F000447AGGAGGMGYVEIFRIDEEGAGWVDLSEATPAELLDLEIGLFQEGAI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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