Scaffold Ga0214921_10047696

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10047696
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3826
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005531	Metagenome / Metatranscriptome	397	Y
F015434	Metagenome / Metatranscriptome	254	Y
F023275	Metagenome / Metatranscriptome	210	Y
F070095	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100476962	F015434	GGA	MESKYPNSWNRHTPKGMNLVDKTTKSTKCCDTCECGQTEEQKFNKLMETQTSFEE
Ga0214921_100476963	F023275	N/A	MAILDNLEYSMADDDGMPIKDDGKPSQKVTDAIKEMLEDPEYNKLMERLKYMENNGI
Ga0214921_100476966	F070095	AGGTGG	VEFYADLDYISFYINNLYPSGVTIELPTWLLVGSVLFIYSIKLIKKDK
Ga0214921_100476967	F005531	AGGAG	MTITYSLWQDYRLLSLDNTAKNADELLEVMKDLNKLGEGFSYNIMKVEVA