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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023174 Open in IMG/M |
| Scaffold ID | Ga0214921_10039312 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4407 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (93.33%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006618 | Metagenome | 368 | Y |
| F006842 | Metagenome | 363 | Y |
| F011646 | Metagenome / Metatranscriptome | 288 | Y |
| F011756 | Metagenome / Metatranscriptome | 287 | Y |
| F027417 | Metagenome | 194 | Y |
| F029021 | Metagenome | 189 | Y |
| F072283 | Metagenome / Metatranscriptome | 121 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214921_100393122 | F011646 | AGGAG | VSNVVELPNRNKITVVFYEVSDAQNIAIWGGESPSEALKWYRNSPLDSKIWVSEWLTDDEDAREVSPQIEITSIVLSTIANCMERWSK |
| Ga0214921_100393123 | F011756 | GAG | MVYVKLLPIDLRGLMSEPRYLSGDEFALSGGYEELINCKECAVEYDRTEYQSDTCSDCEDKRVMREKESK |
| Ga0214921_100393125 | F029021 | GAGG | MKDLCQFCGWEIARVDWYHRYNGKLICDNCVMDTMSEREREEVR |
| Ga0214921_100393126 | F006842 | GAGG | MKAKPVICGDCLILLSDCAHGANYLQELKTSAERLVQLAKEREEMK |
| Ga0214921_100393127 | F072283 | GGAG | MNTMQDLIEAIKPILPNALVIDTDTGILIETNLELGLGGLLQTIEREGE |
| Ga0214921_100393128 | F006618 | GAGG | MSKMKQHLEKQIVIKGKEHEETGWKRYVYFEYEGNEYELTLFYDEFTGYDTYWRVPSKRPDWVVEWDSEAHEGMSFEHYLDDLTWENN |
| Ga0214921_100393129 | F027417 | AGGAG | VNGYDYRVIFITDYLTIITQVNLMPDDDNFNNLSSEAYEQAVINGMNNIVDELGQFDETLINNITVSLLLDDEEIEVSK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |