Scaffold Ga0214921_10036760

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10036760
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4639
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004111	Metagenome / Metatranscriptome	452	Y
F005175	Metagenome / Metatranscriptome	409	Y
F011150	Metagenome / Metatranscriptome	294	Y
F013409	Metagenome / Metatranscriptome	271	N
F105047	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100367602	F005175	AGG	MIDTELHVEDVIEIYNEKILVLKKEIDRLNEEIQVLQIELMQERAKNETKNA
Ga0214921_100367604	F105047	AGGAG	MKTINFDKVIIEWMDINSCDDAWNTEDHLKDLMPASCTTIGYLYEDTPHFVKTFATFSFNADDTIDFGDCIVIPKGCVVSIKKLEN
Ga0214921_100367607	F011150	GGA	MDINYYHKQHDKIKQQFRHDIIMRKLKEKEDKEFRNMFIKIFLVITIFILLVYLIAK
Ga0214921_100367608	F013409	N/A	MKVILTIILMNGTVYNLGYEIDSYSARICDKLFDKVTYIGKASGKNKYGTFYKGKEVFAHSCSIEKTTKGNNERKNKTS
Ga0214921_100367609	F004111	N/A	MKEKIKQVNELAASYGSYINQHGKKCISVWSQVKAFREVFGTDFGIHCQILEHSDRYVIVQAKIFGYDPERIISSGISKQYRDKPGYLSSAESFAISRALSFMGILLEDITSKEEYEELDIPVQPMNGKDTTSADTRYDDSIINELVKKVHYAPHTAKLDFLWRANRELLDQIKIKDLATYNSILNKFNSKRDEITTQNEV