Scaffold Ga0214921_10034196

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10034196
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4882
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004475	Metagenome / Metatranscriptome	436	Y
F017788	Metagenome / Metatranscriptome	238	Y
F020851	Metagenome / Metatranscriptome	221	Y
F037701	Metagenome / Metatranscriptome	167	Y
F098668	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1003419614	F004475	GAGG	MTNWTEELSDKQKEDVWNFVVFTVKEIREQIAKDIEATIPLWKSKGLLKSRRTHKAFEASAAIARGQNEQIDG
Ga0214921_100341962	F098668	N/A	MKNISNIIAASGCFNLDEALRAVAELHIPEGTLVHRCQEDKKPWPCQTIKAIEKELTK
Ga0214921_100341965	F037701	GGA	MIKSKEWRVSNRVWISAGFNPRRIALGFSVDRFNANIDFLWFWVTIEY
Ga0214921_100341966	F020851	GAG	MSEDIVDLAISMAEIDTGMQLPLEEREAMRQRILARIENINQ
Ga0214921_100341969	F017788	AGGA	MKKIIITSLLISLFIPISSVEAATKSLNTKGNKTSCKSIKTNYESAVMSKWSNGLASDQDVLKEIDSNIVMLIAKQKSTSGKIKTNIVSWITAEKNTKIALTNKNVEAITAAMNLKISSISNFDKLCGGIEK