Scaffold Ga0214921_10033422

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10033422
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4960
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004475	Metagenome / Metatranscriptome	436	Y
F011077	Metagenome / Metatranscriptome	295	Y
F017788	Metagenome / Metatranscriptome	238	Y
F020851	Metagenome / Metatranscriptome	221	Y
F037701	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1003342210	F011077	AGG	MDTNLTWAEEDVNLWKGWTYSPEKNRYYFNDIGNESLAAFWADEFLNQAYT
Ga0214921_100334223	F004475	GAGG	MTNWTDELNDKQKEDVWNFVVFTVKEIREQIARDIEATIPLWKSKGLLKSRRTQKAFEASAAIARGQNEQIDG
Ga0214921_100334225	F017788	AGGA	MKKIIITSLLISLLIPNASAQAATKSLNTKGNKSSCKSIKTNYESEVMAKWSNGLASDQDVLKEIDLNINMLAAKQKPTTGKIKTTIASWITAEKNTKIALTSKNVEAITAAMNLKISSITNFDKLCKTIEK
Ga0214921_100334228	F020851	N/A	MSEDIVDLAISMAEMDTGMQLPLEEREAMKQRILARLEDLN
Ga0214921_100334229	F037701	GGA	MIKSKEWRVSNRIWVSAGFNPRRIALGFSVDRFYANIDFFWFWVTLEY