NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10033004

Scaffold Ga0214921_10033004


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10033004 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5006
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (90.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F001562Metagenome / Metatranscriptome670Y
F002245Metagenome / Metatranscriptome578Y
F004051Metagenome / Metatranscriptome455Y
F006744Metagenome / Metatranscriptome365Y
F017995Metagenome / Metatranscriptome237Y
F024549Metagenome / Metatranscriptome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1003300410F017995GGAMAKMKEYIEIIAANCDNCGGAGFVFFGDEKNYDVEPCECIADLSDELTLDWVNN
Ga0214921_1003300411F024549N/AMYKLFTYYDGNLEYTHQFADALQAFEAFAKCYDVGFAKELATYNLEMPTGKMYTKNFNRIGLVSAK
Ga0214921_1003300417F002245AGGMSNLIKVPHTVVFEAIIDLDKVPANLLPALIALDQNTITQMCKEATINALSLSDVLNIANENNTWAEVIMKEGN
Ga0214921_1003300419F004051AGGAMTIDNKTYQVGDLFTTLKSKETGVIKEIIPNSSGSVRVRLETDNGERWTTVLADKLG
Ga0214921_100330046F001562GGGGGMTKSQFEKDLEIKESFIDFLNDIYPTVKIGYSTFTPAEILECCDPIAFAIGLVEHQDYLAELEN
Ga0214921_100330048F000447AGGMGYIEIFRMDSEGAGWVDLSEATPDELFNIELGLLDEGAFE
Ga0214921_100330049F006744AGGAGMNLDEFKAHVLATRQASKAEALSVLSATITTQPNERENLNG
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