NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214921_10032386

Scaffold Ga0214921_10032386


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10032386 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5069
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F012975Metagenome / Metatranscriptome275Y
F014140Metagenome / Metatranscriptome265Y
F016396Metagenome / Metatranscriptome247Y
F073544Metagenome / Metatranscriptome120Y
F077310Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1003238610F073544AGGVREYYEVIKIVFIHAERVYGSVESLGLYASKVRYQKDGIEVEEVLENDEFTIMDEIVFEHVEESN
Ga0214921_1003238611F000473AGGAMEFINKDKDHFKYGVNEWTGEPNKPVFYTPDMAKRIREIKKPDMHLQMDIARYPEFLAIRLYEDNFLQYEGIKKEMVIDYVGKVKKLIESYGVRCELEGVPSARILRSN
Ga0214921_1003238613F012975AGGAMLNLTLKGVEVFIERSKTKSQESYWDNYDLLIWKQNPGGFTSIKGMFRKDQWGITERIPVNEQGIWKLPAKYVKHFK
Ga0214921_1003238615F014140N/AVTAFNETDARDYVGDIFNIDDEIKKVNIVKITEKNK
Ga0214921_100323865F016396GAGGMRKSERLRLLEMQVVRLEMLVELYTQSLTNLLESQGLQSPTQLDAGKWYKAKLDTLDN
Ga0214921_100323868F077310N/AMTLDANSIIIVIAASILSGMGTALVAEIKESKREKIRRAEREQDMLKMELKDLEIKLYKLERDLIEWRDKYYEAVQELIEVKAELEDTLIKLTHLNIHD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.