NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10030725

Scaffold Ga0214921_10030725


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10030725 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5275
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F003393Metagenome / Metatranscriptome489Y
F004132Metagenome / Metatranscriptome451Y
F005348Metagenome / Metatranscriptome403Y
F014849Metagenome / Metatranscriptome259Y
F084217Metagenome / Metatranscriptome112N
F100416Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1003072510F000808GGAMEYTYSLTTSYDGELINTLRVSDMLEAVSAWDKCVDYGFAKEYATYNLSDPTGKMYTKTFYTNGKVVIK
Ga0214921_1003072511F100416AGAAGGMGKVKSTIMDILEHEYCYGYGWLYSGNNVDFDSEACECNPYAISADELMDWKLN
Ga0214921_1003072512F014849AGGMLTNWDLLAIIIALSGSMLVMFLFYKQNVAQQKQIRYLLNLKKLK
Ga0214921_1003072514F005348GAGGMINSVMSFDCNDCNGQGLIFWGNDLDYNVEKCGCNDFALGTLFTSGEAD
Ga0214921_1003072516F084217AGGMSDYLNYLDEVYDDLVAEFGEGITLAYHEANIKEM
Ga0214921_100307252F004132AGGAMSEVMTQEQLTVSYNPNLLVTYKYVPETYAAPESPTFMTDKVTEIEWALHEGRRHAAIAAERRADIAWLEDQIPEWYDPNYDKEDVLKALAEHFAINPMKQMSVYGTVTFSGTINIPLSEIEDFDLSNVTIDAEVSSYDYEADLTVDDVSLEEN
Ga0214921_100307257F003393GAGMKTLENDDIILIMDYYKVDVLTAGQLMVDDSILVDGEVVSITEIVSLADGYTLEIINDFGERDTIQVTEYQQFDLMMLK
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