Scaffold Ga0214921_10023107

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10023107
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6496
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (42.86%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032536	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F039497	Metagenome / Metatranscriptome	163	N
F048123	Metagenome / Metatranscriptome	148	Y
F062447	Metagenome / Metatranscriptome	130	N
F078229	Metagenome / Metatranscriptome	116	Y
F082149	Metagenome / Metatranscriptome	113	N
F104482	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1002310710	F062447	AGGA	MKHKIFWEKNSRVKGVVPSAQIINKTSTDKFPCDAVTIRMYNLNDKNPTATAYFYGKEAQGSSWNGSNYTYAETKLMVTFDKDKEGYSFNGGVKSFSLQDIKEVLDSVRQTLNKL
Ga0214921_1002310711	F032536	N/A	MSQKQTFEELMRSFRFHKNPILNWAFAESNYLYHTFLNGKWKVKNTLQKLTRGFSDSDCWNLPQSTAKFMLPRIKHLRQNYHSLANRHHLIIDDKIVPYIGKEDDFVFNTTLGCHIDKITGLEISLDQKEYEYVLDEIIFALQMIVNEEDSKVGLEELYEVYPKGFDPIKDRQMFLTRQEDGTSLVEFETKDNIQPDYSKLNKAYERQRNGLILLGLYFRDLWD
Ga0214921_1002310713	F104482	N/A	MKNRKKKMTSEEFEKAMKAQGRLVSKVYYRVTFKGMGLYILNSFKFKLFPKFFYMNGKYFTECGFNWLGWIFEFQWNR
Ga0214921_1002310714	F048123	GGA	MKPRYDFSKGKLISYDGEIIEFGDATLVDKYADQVQEIMDLFDFKKGEYLVTDESVIGHFEKQNMNPKKLQKFKKKYKFSLTNRSNISKIAERMYNFRPF
Ga0214921_1002310715	F034827	N/A	MKYTITSQDKEALTEFDKIKEGEVFSFFDPESVQRGNHAIYMKIKVPNTTSVNILDLGDGKAYDFSNKKRNTLNDPDGQQGNAVYKLNAKINIVIL
Ga0214921_1002310716	F078229	N/A	MSDIKYTYYVEQDKDKNGNYIQSFSVYKTPVVKTIKLKTFKKLSEANDFLEKYESN
Ga0214921_100231072	F082149	AGG	MKLGLHIDWCIGRWFGRNNNLEIRVTLPTISLGYNQEDDNKWFGFKFNLSTDISFESYEYGKIFTLILFGFGVKLSKFYI
Ga0214921_100231073	F039497	N/A	MNEEDNFHCQAGNQLRDTLYKDILRYAQESDMTAYQVIGVLESLKFDLLNAMVESGKDNEDEI