Scaffold Ga0214921_10021916

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10021916
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6753
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000980	Metagenome / Metatranscriptome	814	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F005741	Metagenome / Metatranscriptome	391	Y
F006984	Metagenome / Metatranscriptome	360	Y
F017134	Metagenome / Metatranscriptome	242	Y
F020168	Metagenome / Metatranscriptome	225	Y
F074872	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1002191612	F000980	N/A	MTTWNKYTHVCHTCDALIEYTSTRDVIDITCECGGNTAYLSVADATIAPSNQTKEEKMESPSTEITTSTVPDTYNANLLVTYKVIRGYSDAEYTTDKVASLEWDLHNGRQSQKKVSLLQDKINKVKDIITEAYEDSEDKDTLRAIAEALDIELVREVLFTATLEVSGTYTYNILDSDYELDLDSEVTDALYADSNNGNITIDDTEVCHVREA
Ga0214921_1002191614	F001043	GGAG	MSDYRDGFDDGYKFAREEMIEKLAEIDITDIDSWILDRLAEMIEGNQL
Ga0214921_1002191616	F001125	AGGCGG	MGDRANFGFKDRKGDTVFLYGHWAGHRMLENLANAVEAARPRWTDESYATRIAISHLINDEWKSETGWGISVNQLSDNEHKVPIINWAAKTFTLMEEDLTTEVFSTSLESFVNKYSQLEEPVMV
Ga0214921_1002191617	F006984	AGGA	MPNWVYNTLTIQGPKDEIDMIKDRLNAPFTLAQETFGMGDISLSGFPTKITQVTYSNPVF
Ga0214921_100219162	F017134	N/A	MSVRSVIILSTTNERPLMDNFTVACLNYEICGATTTFFDEAEYEIYGDDYMCAECYDSEEMEFYETTGWADADALASAGHGMDEDY
Ga0214921_100219164	F020168	GAG	MTDVIGSLIGIVLIFFLCSPIVLAVYMLSSSKVDIDGDGIDDVPNRWDNT
Ga0214921_100219167	F074872	AGGGGG	MSAPYGKILPYKKGSKMTVNGYTYKVGDLFTTLKSKKTGVIKEIIPNSSGSVRVLLEMPTKETRWTTVSNASLV
Ga0214921_100219169	F005741	AGG	MKNRFRVEIYDANKLNDVTIYSEQGVDKEYLTELVYSNLRKFSGKVNAYVFDNVKKKKTTAMFLDEETVNRYNVNTNQNTAQQLGLA