Scaffold Ga0214921_10021342

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10021342
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6881
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009669	Metagenome / Metatranscriptome	314	Y
F010817	Metagenome / Metatranscriptome	298	Y
F014229	Metagenome / Metatranscriptome	264	Y
F028084	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1002134210	F009669	N/A	MKTMLSKIFGPNWRSSSSGIATVVAVCTAIAIHSDPSLVAFLPDQAEVYILGISKLVAVVSGIVFALTVKDAAVTGGTVAQTNEAKDRTNGENI
Ga0214921_100213423	F028084	AGG	MRKLILILPLFLLISCSEPNFDSRELPTKYPETPTMGSADDVSKELYKK
Ga0214921_100213427	F010817	AGGAG	LKKFASVLVLNLVLIGCATVTPNKIEDDKSSYDATTPKQYQKDNGGLISFVGDDALITSQARERYNNLIGMYKIKFKKEKAIELKTDSGIKPYKDSFGNELFLINSEHLVYFGVLNSWLKEKVPQDNILDKTIDKINN
Ga0214921_100213429	F014229	GGAG	MNKLQLAAVALLSVFLGACATTPTGQVDPATSVSNALPYVKPAVVLACTVVLDQALSPNDRVEKAKMINHVAAIVEGLTVGTAPTPEQLQKALTDYLPAEKTHWANYVTVIKDLYAQQFARLDGNTALAIKVLNAIASGCKDATASYVE