Scaffold Ga0214921_10018591

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10018591
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7604
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (77.78%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F001562	Metagenome / Metatranscriptome	670	Y
F003379	Metagenome / Metatranscriptome	490	Y
F005531	Metagenome / Metatranscriptome	397	Y
F006744	Metagenome / Metatranscriptome	365	Y
F009143	Metagenome / Metatranscriptome	322	Y
F017134	Metagenome / Metatranscriptome	242	Y
F017995	Metagenome / Metatranscriptome	237	Y
F051126	Metagenome / Metatranscriptome	144	Y
F092052	Metagenome / Metatranscriptome	107	Y
F093318	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100185911	F017134	GGA	MEKFTVACLNYEICGAEETFYSDEEYEIFGDDYTCAECYASEEMEFYELTGWADSDALASAGFGMDEDY
Ga0214921_1001859111	F000447	AGAAGG	MGYIEFARIDEMGVEWVDLADSTPQELLDFEIALFQEGAI
Ga0214921_1001859112	F006744	AGAAGG	MNLDEFKAHVLATRQASKAEALSVLSATITEKKEGSN
Ga0214921_1001859113	F005531	GGAGG	MTITYTLWQGSNLLAVNQKASKPEEILAVIAELNKLGKGFTYNIREVDTK
Ga0214921_1001859114	F009143	AGGAG	MMTKWDTIQADVSDAYVYLDEEEAYNKALEEGAISVIDFDDFDEDELSKSLTLNWED
Ga0214921_1001859121	F003379	GAG	MKKIWALITLIATAILSGVALNKFLNWAGQIEIFDFDLDENIDKEYL
Ga0214921_1001859125	F092052	GGTGG	MLDECKNGQCACEEEENFFHVKVITQNSANFSAAEEETFSSYEFEANAIIDKDAIGREIFWNDMGRP
Ga0214921_1001859126	F093318	AGTAGG	MQIQYVSKYIALSEEGLVPRLKCPMDQGPLLPNLDLEDKIFLYCLSCEYKKFIGAKDYDDIVKAVDNVR
Ga0214921_100185916	F017995	GGA	MANVKQYLEIISAECDECGGAGFLFFGDENNYDVETCECVSDVADELTVDWVNE
Ga0214921_100185917	F051126	AGG	MSAKPYTIASLLEGKHYRSHSRHDEGTILYAEKRDSVWYGSDFEAYAIEVRSTRGIKNFWATVAVKVSD
Ga0214921_100185919	F001562	N/A	MEKTQFEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPVAFSIGLIEHEDYLAEMENE