Scaffold Ga0214921_10018134

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10018134
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7739
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F007747	Metagenome / Metatranscriptome	345	Y
F016963	Metagenome	243	N
F020510	Metagenome / Metatranscriptome	223	Y
F048158	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1001813413	F048158	N/A	MGRPVNHDVKRAMAATGKSRATVYLQRKKVEAQPLVKARGGGLDVEIQRLEDLAASLGESAKDDTRADRSELISNYTKLVEALRRMKGDRPDIDQAEGTMVPVDEADRVLAARDNALIPLLKGMAKRLAPICANKPAAEVEADVENEVGQIMRQVEAAL
Ga0214921_100181342	F016963	GAGG	VIEILPEQSTHEQLLNRVRSLARQLAEAKAALAASEARENDLIDRIRGGL
Ga0214921_100181343	F005502	GGTGG	MLLSFIALLGFTTTKLGNALIDLRPIAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSRIRVIGAKREWVAVDTGTAVKSKKASGGKLPVIDVFAASEKQFNAMRLPKVAMVEVMK
Ga0214921_100181345	F020510	AGG	VSLQDLLTMFSGRVIGTYTPEQYANCVREARANRMRWGMGQW
Ga0214921_100181349	F007747	AGGAG	MKDLGKITFGKSRPAPKQILVDVTYDAKTAKALHAFGLKQLKKDSEAVIEYVIVKALKGLVKK