NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10017217

Scaffold Ga0214921_10017217


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10017217 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8048
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (60.87%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004111Metagenome / Metatranscriptome452Y
F005175Metagenome / Metatranscriptome409Y
F006218Metagenome / Metatranscriptome378Y
F011150Metagenome / Metatranscriptome294Y
F013409Metagenome / Metatranscriptome271N
F034179Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1001721713F004111N/AMKEKIKQVNELCAANGAYVNQHGKKTVSAWSKIKYFREVFGTEFGINCVMQEHSDRYVIMKCIITKCDPEHIIATGYSKQFRDKPGYIEIAETFAITRALSFMGILLEDVTSKEEYEELEIPVQPVNTKGTSSANIRYDESTINELIKKVHYAPHTAKLDFLWRANRELIDQIKIKDLATYNSILNKFNSKRDEITTQNEV
Ga0214921_1001721714F013409N/AMKVILMLIMMNGTVYNLGYKVESYDARTCDKLFDSVTYKGKTSGKNKHGTFYKSKEVFAYSCSIEKTTKGNNERKNKTG
Ga0214921_1001721715F011150GGAMDINYHNKTHQKIIENFRHDIIMRKLKQKEDKEFRNMFIKIFLIIVIAILLLAVINNYR
Ga0214921_1001721719F005175GGAGMIDKELHVEDVIEIFNDKILVLKKEIDRLNEEIQVLHIELMQERTKNETKNA
Ga0214921_100172173F034179N/AMSNDIGTMFSQAYSKKVSLLSQQGSNVKIKIKKKNGKKKS
Ga0214921_100172176F006218GAGMGKRKEILKSCGNCHICGKEHLSNEGGWVINAEKLNFCHSLDHSCYEIYFNNVRAKEKQKVVINTENDKRMNMYIEYLKSKKCRHKYAGE
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