NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10017015

Scaffold Ga0214921_10017015


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10017015 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8131
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (57.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001280Metagenome / Metatranscriptome732Y
F006846Metagenome / Metatranscriptome363Y
F008814Metagenome / Metatranscriptome327Y
F014017Metagenome / Metatranscriptome266Y
F045752Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1001701512F001280N/AMCIECGCGALGSETGIIPVTVTDVSRDGESGLTLDMTSTPEQTRQFINE
Ga0214921_1001701515F014017GAGMDDLIKYLDENHRKKIADEIRYLELPPEWRPYEVIRYILRIIEKNNG
Ga0214921_1001701519F008814N/AMADRLTVLEEIIKEIGEELYQKWYNGLAIEDRTEDASKAMATNAGETAMWVIQTFMSKFNAAAEELKPDDSNG
Ga0214921_100170158F045752GAGGMADPNQTPARGSWVCPCSGCSKAVAFERENLVELILLHKAEYLVYRGSSFDAEGNLLWAKDDASAYAEGIDYVVKLIEDRKPKPKKKG
Ga0214921_100170159F006846AGGAMKMLIEFVERYLMRPKRLRMAIQAVVRDNDELFRLLEESELEEPTNLTWSEGDRWYGWTYNTNAKRYYFDDIGNESLMGLWEDQWAREADENGRSKSNTSQG
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