NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10016337

Scaffold Ga0214921_10016337


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10016337 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8361
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (68.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000852Metagenome / Metatranscriptome860Y
F001019Metagenome / Metatranscriptome804Y
F007921Metagenome / Metatranscriptome342Y
F014017Metagenome / Metatranscriptome266Y
F022414Metagenome / Metatranscriptome214Y
F088905Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1001633711F007921AGGAMINWLVNRIFRWDQLRDAVFDELMLYQSITKAMTQRDHDNPLNLAWAEGDRWYGWTYNRSQKRYYFDDIGNESLMGLWEDQWAREADETSNV
Ga0214921_100163372F014017AGGMDKIEEYLDGSHRKKIADEIRYLELPPEWRPYEVIRYIVRIIEKNNG
Ga0214921_1001633722F022414AGGCGGMSKSPEIKVAEQLTNLMDDHWFNPTIFGRYLAEQPLYTIDRVMEMVVSIISEQAKTYVLHKGRGETTEGLLLANELNECVKAYQEVNVISNLKLPKPTVYNVKREEPIKRIQFGWREDKDPFQ
Ga0214921_1001633723F000852AGGAMTTKREYLKAQGIAVGVRGRFSGAAKVALQEAAAKGITFTAETPVKKAK
Ga0214921_1001633725F001019AGGMTYEPSLEILEVEYSCSPGGIDLFEVYDKSDIPLSVPIYETENLTEAVLFCYNLGKDFTVKTLAEWNERELAYEA
Ga0214921_100163375F088905N/AMSEKDIDTTPVVETIVAEEAKPKAEAKAEAPAANADATVDYWANAWANRGV
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