Scaffold Ga0214921_10015522

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10015522
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8679
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (66.67%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001280	Metagenome / Metatranscriptome	732	Y
F006846	Metagenome / Metatranscriptome	363	Y
F011394	Metagenome / Metatranscriptome	291	Y
F014017	Metagenome / Metatranscriptome	266	Y
F028166	Metagenome / Metatranscriptome	192	Y
F066776	Metagenome / Metatranscriptome	126	Y
F072349	Metagenome / Metatranscriptome	121	Y
F078716	Metagenome / Metatranscriptome	116	N
F088905	Metagenome / Metatranscriptome	109	Y
F105192	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1001552218	F105192	N/A	MNIPLAEIIITLFAAAISGLLTAQFSARRSKKEKIEHLAEKAHDQLLLEIKDLQIKLYKLEKDLNEWKDKYYQALQELIRVKAELEGTLLKLTHIEIHSNED
Ga0214921_1001552219	F072349	AGGCGG	MDKVLCYSCNKSKNELSLKKSLILPINLLLCKTCSDNKFEPRWTVILAGRQYGSDHVKEFISKKKYTGPDITASELLI
Ga0214921_1001552221	F011394	AGGA	MFIDKNKDHFKYGINEWTGEPNKPTFYNKEMALKIREIKKPTPTLEMDIVKYPEFLAIRLYEDNFSQYDGSMRVRVIEYIEMVKNILESYGVRVELEGKPGGRR
Ga0214921_1001552223	F066776	AGG	LLHLTEKGVEVFIKRSRTKLQESFWNNYDLVIWKKDSGGYTDLKGMYRKDAWGKAEKISVSREGIWKLPKRYVKYFK
Ga0214921_100155223	F006846	AGGA	MLTDLVEKYLMRPKRLREAIQDVVRENDELLRIIKEYEQDETPTNLTWSEGDTWYGWTYNTKLKRYFFDDIGNESLMGLWEDQWAREKESEDKNMFENQVDFE
Ga0214921_100155224	F078716	GGA	MPAPSNSEPSGALTSREVPRKYPKQGSRPGIKIDQNKHGIRRETSLDPKPQKKGRPKKV
Ga0214921_100155225	F001280	GAGG	MCIECGCESVGSETGIIPVTITDVSRDGESGLTLGMTSTPEQTRQFINE
Ga0214921_100155226	F088905	N/A	MSEKDIDTTPVVETLVAEEAKPKAEAKAAPADADATVDYWANAWANRGV
Ga0214921_100155227	F028166	AGGAG	MTNGIDLTGFNELHGGDSNNLDLNPTGQAPAAAFPAEDKSTQDGAGLGQNGK
Ga0214921_100155229	F014017	AGG	MDKIEDYLDEKHRKKIADEIRYLELPPEWRPHEVIGYIVRIIEKSNG