Scaffold Ga0214921_10014579

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10014579
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9086
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (86.67%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000980	Metagenome / Metatranscriptome	814	Y
F001125	Metagenome / Metatranscriptome	769	Y
F002245	Metagenome / Metatranscriptome	578	Y
F002598	Metagenome / Metatranscriptome	544	Y
F004051	Metagenome / Metatranscriptome	455	Y
F005741	Metagenome / Metatranscriptome	391	Y
F006744	Metagenome / Metatranscriptome	365	Y
F017134	Metagenome / Metatranscriptome	242	Y
F017995	Metagenome / Metatranscriptome	237	Y
F019325	Metagenome / Metatranscriptome	230	Y
F034472	Metagenome / Metatranscriptome	174	N
F076101	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100145791	F034472	AGGA	MPNWCYNTLTIQGPKSEVDMIKDRLNAPFTLAQETF
Ga0214921_1001457910	F005741	AGGA	MKNRFRIEIYDANKANDLTLYSEQGVDREYLNELVFSNLRRFNGKVNAYVFDNLKKKKVTAMFLDESIASKLQTN
Ga0214921_1001457912	F004051	AGGA	MTIGNKTYQVGDLFTTLKSKETGVIKEIIPNASGSVRVRLETDNGERWTTVLATA
Ga0214921_1001457914	F002245	AGG	MSNLMKVPHTIVFEAIIDLDKIPANLLPALIALDEKSIQQMCKEATLHALGMSNVLPLANENNTWAEVTIAEGN
Ga0214921_1001457916	F017134	GGA	MEQFTVACLNYEICGAEENFDSIEEYEIYGDDYICAECYDSEEMEFYELTGWADADALASAGHGMDEDY
Ga0214921_100145792	F001125	AGGCGG	MGDRANFGFKQSNDNTIFLYGHWAGHGMLERLANAVEAARPRWTDESYATRICVSQIVGEDWKAETGWGLSVNRILDNEHKIPVIDWAEQTFTLMEEDLQTVVFSLSLDKFCTKYSQLVM
Ga0214921_1001457920	F076101	N/A	MYKITLSYDGNAPHWQKDYENEFDAWKDFFEFVDWGFANEYSTVNIYNSEMKCFTRHFYREERKVVTVK
Ga0214921_1001457921	F017995	GGA	MAKMKEYIEIIAANCDECGGAGFVFWGNETSYDVEPCDCIADVADELTVDWVNE
Ga0214921_1001457922	F006744	AGG	MNLEEFKKHVLDQREASKAQALSVLSATITKTNEGENQNG
Ga0214921_1001457923	F000447	GAG	MGYIEFARINEEGVSWVDLSKATPEELLEIEIGLFQEGAI
Ga0214921_1001457924	F002598	AGAAGG	MATKLYTIESLLVGKNYRSNSRHFSGEIVSAEPRPEIWYGENTEAFLIEVNAGGLRNKFATIAVKVGE
Ga0214921_1001457928	F019325	AGGAG	MTQLNETLFSTIVHEYHNGGVKSSYGLDAYTRKELLKFLFSSKSCNCINCICKEDK
Ga0214921_100145796	F000980	GGA	VHVSGAWYNSSMTNELVSSKYTFVCDPNECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLVSVESATIAPSTQTKEEKMEETTTPAVTVPDTYNPNLLVTYKVIRGYSDAEYATDKVASIEWDLHNGRQSQKRVTTLLSQIDTVKDIITEAYEDSEDKDTLRAIAEALSIDLVREVLFTATLEVSGTYTYNILDSDYELDLDSEVTDALYADSNNGNIEINDTEVCHVREA