Scaffold Ga0214921_10010827

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10010827
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11208
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (79.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006385	Metagenome / Metatranscriptome	374	Y
F063708	Metagenome	129	Y
F095454	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1001082711	F063708	GAG	MDLNTFKEYLNIHLTSLEQDLEENPASIHVVDIEGQIYAVKHMIEVINER
Ga0214921_1001082726	F006385	GAGG	MILDTGTLIAIVIALGGSLSMMLVFWKQNVEQHKEIRRLQVALRDERNK
Ga0214921_100108274	F095454	GAG	VDFGKIAIILSQINTDALELEDVEYLPSDFWKDLEDGLGLADFVAGGWAEPTEAGKSQLELAWRTLCDIREIDPETMYDNPADFFKAQETK