Scaffold Ga0214921_10008347

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10008347
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13452
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (43.48%)
• Novel Protein Genes: 16
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (56.25%)
• Associated Families: 16

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016774	Metagenome / Metatranscriptome	244	Y
F024040	Metagenome / Metatranscriptome	207	Y
F027756	Metagenome / Metatranscriptome	193	N
F030670	Metagenome / Metatranscriptome	184	Y
F032536	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F036564	Metagenome / Metatranscriptome	169	N
F044916	Metagenome / Metatranscriptome	153	Y
F048123	Metagenome / Metatranscriptome	148	Y
F049419	Metagenome / Metatranscriptome	146	Y
F062446	Metagenome / Metatranscriptome	130	Y
F062447	Metagenome / Metatranscriptome	130	N
F064403	Metagenome / Metatranscriptome	128	N
F082109	Metagenome / Metatranscriptome	113	Y
F096610	Metagenome / Metatranscriptome	104	N
F104482	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000834712	F096610	N/A	MANRPKTYFVKMTDNTNGTITISEAKVLDKVNQHTRHWRSFDKRKLTSKLRASDLLTK
Ga0214921_1000834714	F049419	AGG	MKFPKFDYLNLATTYILFGLIYGTIVALVWNYLFESVSNIHLSILQGFGIHLITRILFGNTNTNYVSNFYTPKAPDLDKIDSYLKEMQADLDKEADEVERQYEDLDKKD
Ga0214921_1000834720	F044916	N/A	MGKVKSKIEKGLDKEQKTFALMAKKIIDAIKDEKELRAFAKTSLEVLYKDNPNLFSDHAKLKLKKK
Ga0214921_1000834722	F064403	GGAG	MINPRSKILSDLKKAYLKEHPVSLVDRILGHLNNLTDFQLCQLYSEKYETNPKYISEQFEFKF
Ga0214921_1000834723	F036564	GGAG	MKLGRICVDLNYIVDMDNDEMVRHATEALYEDLMQGVKYGDLANWISVSEDKNATEDMIPEFLLEKEND
Ga0214921_1000834725	F027756	GGAG	MKLKDLIDRKILFINFPINRHAIQEGKVSEISPAEKCMKINNDWHLVSNIRIIELFSKDERPSLGFN
Ga0214921_1000834729	F030670	GAG	MKVIRYIKQLEDEFGNDLELWGAYEETRKDNYPNVDFIDAKLLKTFPSPYHARNWMENDGKRTY
Ga0214921_100083473	F062446	N/A	MISKSIRVIGFILYCLFWLALAYLFIGCANVSYKTIPDGMSEDAQDYPTKYNTMDSPDGRRNPNAQVNIFGATY
Ga0214921_1000834731	F034827	AGGAG	MKYVISSQDKEAMIDFDKLKEGEVFSFFDPESVQRGNHSIYMKIRVPNFTGANIVDLDDGKAYSFSDKKRNTINDPDEKQGNKVYKLNAKINIIII
Ga0214921_1000834732	F048123	N/A	MKPRYDFTKGKMISYDGEIIEFAGSSKIDKYEDQIEEIMSLFNLKKGEYLVTDESKISDFGKDTINILRLAKFKKKYKFSVMNKDFLYKIAERMYSYRPF
Ga0214921_1000834734	F104482	N/A	MKKIKKWKKEVTSEEFEKEMKAQGRFVSKVYYRIRYKDMGLYILNSFQFKLLPKFFYMNGKYFTECGFNWLGWIFEFQWNR
Ga0214921_1000834736	F032536	N/A	MSERKTFEELMRSFRFHKNPILNWFLGEVSYYSHTYLNVKWGLKNKLQKLIRGYSDSDCWNLPQATAKFILPRIKHLRKNYNSLANRHHLIIDDKIVPYVGQENNYEFDEKLGCHKDKTTGLELSLDEKEYEYILDEIIFALQTIVDEDDINVSLDEVYEVYPKGFDPIKDRQMFLTKESDGNYLVEFESKKNVAPDYSKLNKAYKRQRNGLLLLGLYFKDLWD
Ga0214921_1000834737	F062447	AGAAGG	MKHKVFWEKNSRIKGIVPKEQIIEKTQTHKFPCEAVTIRMSNVNDKNPTAVAYFHGKEAKGTSWNGSNYTYAENKLMVSLRKEGNGYNFNGSIIDFFSLQDLKEVLDSVRETLNKL
Ga0214921_1000834738	F024040	AGAAG	MILKMIKMMETIILHTDMNFFVSGHNWFAKVSLDKDVKKSDRYTEATTRAIESLLDQEEKEGVDLKVLNYDDYGLGLITLTYDEKDSKKEGEHRVMLTSNILANAGRWDDYKTIKDYEEKCKEEGL
Ga0214921_100083474	F082109	N/A	MWTPVDIFILTFLLNHSPIKSERLSVKEVIQNREAQFLIESVTLRNDF
Ga0214921_100083479	F016774	AGG	MLPKKNKIIINKEQLDSLNHWREQVLKMEKSYYSKDLEKERTCRNMINKYLDEVLESNKNIKEKSKK