Scaffold Ga0214921_10007594

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10007594
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14394
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (76.09%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Associated Families: 14

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F002515	Metagenome / Metatranscriptome	552	Y
F002598	Metagenome / Metatranscriptome	544	Y
F003965	Metagenome / Metatranscriptome	459	Y
F006385	Metagenome / Metatranscriptome	374	Y
F007263	Metagenome / Metatranscriptome	354	Y
F011487	Metagenome / Metatranscriptome	290	Y
F017133	Metagenome / Metatranscriptome	242	Y
F020167	Metagenome	225	Y
F020910	Metagenome / Metatranscriptome	221	Y
F023106	Metagenome / Metatranscriptome	211	Y
F026557	Metagenome / Metatranscriptome	197	Y
F035304	Metagenome / Metatranscriptome	172	Y
F071231	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100075941	F003965	N/A	VCVEHTPNKSAISEYADTQFTFCEICENNIERWYNDSDPERLPMWSDWKVSK
Ga0214921_1000759410	F071231	AGGTGG	MMTRKDYVKVAEILSNYFATSVFDEQGEMLFADLVDEFSLMFESDNERFDANRFAIACYKELEMSK
Ga0214921_1000759411	F006385	GGAG	MILDNGTLIAIVIALAGSLGIMIAFWQRNVKLEKEIRRLQVTLRTERLKK
Ga0214921_1000759412	F002598	GAGG	MATKLYTIQDLLIGKNYRSRNRHFEGEIVSATPRPAIWYGENTEAYLIEVNARGLRNKFATIAVKVGE
Ga0214921_1000759413	F007263	AGG	MITTNYIDQNEFYLIKDEMLFCCDESQFKHTCKAHGEAMGCYYCEFDYSQDCEEQH
Ga0214921_1000759414	F000447	GAGG	MGYIEIFRIDNEGAGWIDLAQANSDELFNLELGLLNEGALFTTKEAE
Ga0214921_1000759419	F002515	N/A	MKKTPEELRRLMELRRSNAASAIPSKKKYTRKGGKCQSDMLELYKQQKGE
Ga0214921_100075942	F017133	GGA	MSIWTKFATVSDYPKGLMNLCPCGQVVLAPALYHEGQPYWENPNKCKELFEGVTK
Ga0214921_1000759420	F011487	AGGAG	MGNIADEFFDEYYATTCPECKENAVDAYEEKCTHCLLEEMSATYNEDIALEMSLGLDY
Ga0214921_1000759429	F020167	N/A	MTQTMRTIDELVNEMYMDNESHLEYMENMNGGDCDCAIHTTLNTIVKYWWDEEN
Ga0214921_1000759431	F020910	GAGG	MWSKYTFVCDPDECDALLEFTARDEYGFPNGSVEMTCPCGRKMAYIGYNDAWGPIFPVTNITPREVVKINTNPYN
Ga0214921_1000759432	F035304	N/A	MDLNTLKEYIRLHAISLEQDLENEDGADSIVPYLEGAIHVSRHYLEVAGE
Ga0214921_1000759438	F023106	GGA	MRISRRVTDEEKVAMKLGNSISDLRVDLELVGEYLAKSQPNVVYNRLQVIAESAKETKEGTNYGKNNF
Ga0214921_100075948	F026557	AGG	MINSVLSIPCEECHSTGLIFFGNENDFDVETCVCDFGMEQDLNLFNTPEAN